CACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAATCCGCGGAA
TTCCAAGAGTATTCCATGAAGGCAAGTGATGAGGAGGCTTAGCTTTAGTT
CCTTTAAAGAGGAAAGCAAGTCACTGTCTCCTGGTGTGAGAAAACCAACC
CCGTGAAGGATGCTTCACATACACACTGGACAAAGGTGAAATTTGACATT
TTTCCTTTTGGTTTTGGTTGGTTTGTTTGTTTGCTTTGTAATGAGAGAGA
TCTTTTCTCCACATACCACCCTTATCCCTTAATCTTTAAATTTCTTAACC
TTTCTCTTCCCCTTCCTATTTCTCTATTTTTTTTCACTTTCCATCTTCCA
TCACCTTTTCCACTTTTTTATTTTTTATTCTCTCCCCCCCCCTTACCATT
TTCCCTTTCCCCCATTATTTTTCCCCCTTTTTTTTTTTTTTTTTCTCTTA
CCCTTTTTTTTCATTTTACCTTCTCCTATCTTTTATTTCTTTAAATTTTT
TCTTTTTTCCCTTAAACTTTTAACACTTAACATTTACTCCATTTTATTTT
TTTCCTTTTATTCTCTTTTCCCTTTTTTCCCTCCTTCCCCTTTTTTCCTT
TCCATTTTATTTTTTTATCCCCCCTTACATTCTTTCTTTTTTTTTTCTTA
CCATTTTTCATTTATTCTTCATTTTTTTTTTACCTTTTTTTCCCATTTTT
CTTTCCCCCTTTTTACCCCCTTTATCCCTTTTTCCTTTTTTCACCCCTCC
ATTTTCACTCTGC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTGTTGTTGCTAGTGTTAAATCAAACG
TAATATTGAATTGGTTTGTTCAAATGATGACTATTTTAAATACATGCAGG
GGGAAATCATGATGCCTTAAAAACTCTTTAAAATAGTGTGTTTCTTGTTA
AATACGAACAATTACCATCATTTTGCTGACTGTAGAACATCACACACAAG
ATAAAATAATTTTAGATTTCCAAAATAGATCTTTCAGAGTGCCTTTAAAA
CCTCCACATAGCCTAAAAATCATTAAACACAAGCACTTGGAGATGTTTTT
TCCTAGGTCATTTACGCAGTATTCCCTGAGTTGCTTTAAAATACAAATAA
TATAATAATACTTCACGTGCATTATAATTACTCACAACACAGTACAATAT
CGAGACTGAAAAATTCTTTCACAGTTGACCTACATTGTTTAACACATGAA
ATGTCTAATTGACAATTCTGTACCTAAGTGTAAATTTGCCTCGGAAGGAT
ACACTCTCTGCCTCTCTCTCTTTCCTTCCTTCTTCTTCTCTTTTTTTTCC
TTTACCCTTCCATTCAGTCCTCCTCGTGATCCGTATCTACTACTTTCTGA
TCTTCGTCGTCTTTGACTAACACTCGTCTCTTCCTGACCTTTGTAACCTT
TTACTCCTTCTCTCCCATC

Query= MSMg01no140_g12.b1 MSMg01no140_g12.b1 CHROMAT_FILE:
MSMg01no140_g12.b1 PHD_FILE: MSMg01no140_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:07 2005
         (177 letters)



>mm_chr3_119697335_119697911
          Length = 577

 Score =  269 bits (139), Expect = 7e-77
 Identities = 166/175 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggcaagtgatgaggaggcttagctttagttcctttaaagaggaaagcaagtcactgtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 375 aaggcaagtgatgaggaggcttagctttagttcctttaaagaggaaagcaggtcactgtc 316

                                                                       
Query: 61  tcctggtgtgagaaaaccaaccccgtgaaggatgcttcacatacacactggacaaaggtg 120
           ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||
Sbjct: 315 tcctggtgtgagagaaccaaccccgggaaggatgctccacatacacactggacaaagctg 256

                                                                  
Query: 121 aaatttgacatttttccttttggttttggttggtttgtttgtttgctttgtaatg 175
           | ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 255 agatttgccatctttccttttggttttggttggtttgtttgtttgttttgtaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no140_g12.g1 MSMg01no140_g12.g1 CHROMAT_FILE:
MSMg01no140_g12.g1 PHD_FILE: MSMg01no140_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:08 2005
         (240 letters)



>mm_chr3_119577335_119577974
          Length = 640

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttgttgctagtgttaaatcaaacgtaatattgaattggtttgttcaaatgatgacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttgttgctagtgttaaatcaaacgtaatattgaattggtttgttcaaatgatgacta 260

                                                                       
Query: 61  ttttaaatacatgcagggggaaatcatgatgccttaaaaactctttaaaatagtgtgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaaatacatgcagggggaaatcatgatgccttaaaaactctttaaaatagtgtgttt 320

                                                                       
Query: 121 cttgttaaatacgaacaattaccatcattttgctgactgtagaacatcacacacaagata 180
           ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 cttgttaaatacgaaaaattaccatcattttgctgattgtagaacatcacacacaagata 380

                                                                     
Query: 181 aaataattttagatttccaaaatagatctttcagagtgcctttaaaacctccacatag 238
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 aaataattttagatttccaaaatagatctttcagagtgcctttaaaacatccacatag 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)