BAC Information

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BAC

Clone NameMSMg01-140J01
Chromosome3 (Build37)
Map Location 149,949,547 - 149,949,718
singlet/doubletsinglet
Overlap genenone
Upstream geneEG381483, LOC100040620, LOC100040633
Downstream geneLOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140J01.T7 (MSMg01no140_j01.b1)MSMg01-140J01.TJ (MSMg01no140_j01.g1)
ACCAG345666AG345667
length716712
length of high quality
(start - end)
173 (75 - 247)531 (75 - 605)
definitionCHROMAT_FILE: MSMg01no140_j01.b1 PHD_FILE: MSMg01no140_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:20 2005CHROMAT_FILE: MSMg01no140_j01.g1 PHD_FILE: MSMg01no140_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGGAACGGAGGCGCGG
AATTCAAGTCCTTACTAAAACAGAAGAGAGCCCTTCTCAATAAATGAATA
CATGCATACATGCATGCATACATACATACATACATACATACATAGGTAGA
ATTTAAATAACTGAGTTCCGATGGGGTAAAAATAGTCCTGCAGAAAGAAA
CATGTTTTGTAGAAAAATTCATGTTAAAAATAATTTAATCAGAGCAGGAA
GCAATATTTTCAGAGAAATAAGGTTATTTTACAGGTGGCTGGTATATTCT
TCAGATTAAAAAAAATGAATATGATCATTTTAATTTTTAAAACTGATAAC
TATTAGGAAACCGAAACTTGCTATCTGACAAGTCCATATCTTGAAAGTAG
GAGAGTGTGAGTTAGAATTTCTGGCACCCACATGCAAACGTTGGGTATGG
CTGTAGGAATTTTTTATCCTGTTGCTGAGACAGGAGAGTGCCTTGGGCTT
TCTGGTCACCAGGTTTGGTCAATCAAGCTGCTTTGGGGAGAAAAAAATGA
AACAATATTCTTATTCAGCTTTCAAAACTTTATGGATACTTCATTCCTAC
TTGGAATGGCGAATAAAAATAAAGTTTGAAGCTGAGATGGAAAGAAGGAA
CATCCAGAGAATTCCTCACCCAGGGAACCATCCCATTAAATGATTTCTAT
CCCTACTCTATTGCAT
TCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGGATCTCCATGAGTCTGCATTT
CCACTCGCAGAAAACGAGGAGTCACTTTTACCCATATCTAATCTGCTGTT
TGTTCTTTGTTAACATCTGTCTGACTGAGCTCAGGAAAAAAAATCTCAAA
GTTGTTTTAATTTGCAATCCCTTAGTTGCTAAAGATAAGGAATGGCTATA
TTATATGTTTTAGCAATTATTTATTCTTCTTTTTAGAACACTCTGCTCAG
ATCCCAGGCTTATTTTTGACTAATTCAAAATTTTTTTCTGTAATTTTAGT
TCTTTACATATTCTTTATATCAATTCTTTCACTGATGTATAGTGTGCAAA
AAAATCTTCCATTCTTGACTATTTGTCTCTTATCTTTAACAGAAATTTTA
GTTATATGAATAACTACTTCTCAATTGTTAACCCTGAATCAGTAAAAATA
GAAAGTCTTTTCCTAACACTATGTTTTTTAGGGTAAAACCTATTTTCTTC
TAAGAATTTCCATCCTTCAAGTTTCACAGTTTAAGATTTGATCAAAAAAA
TAGAGCACATATCAGAAAACCCAAGTTCTGCACAGGGAGAGTTGTGCAGT
GCAGTTCCAAATGTTATATCCACAACATGGCTTCTGTTTGTAAGGATTAT
TGTGGAGGGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_j01.b1 MSMg01no140_j01.b1 CHROMAT_FILE:
MSMg01no140_j01.b1 PHD_FILE: MSMg01no140_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:20 2005
         (173 letters)



>mm_chr3_149949347_149949918
          Length = 572

 Score =  304 bits (157), Expect = 2e-87
 Identities = 169/173 (97%), Gaps = 1/173 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagagcccttctcaataaatgaatacatgcatacatgcatgcatacatacatacataca 60
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 201 agagagcccttctcaataaatgaacgcatgcatacatgcatgcatacatacatacataca 260

                                                                       
Query: 61  tacatacataggtagaatttaaataactgagttccgatggggtaaaaatagtcctgcaga 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tacatacataggtagaatttaaataactgagttccgatggggtagaaatagtcctgcaga 320

                                                                
Query: 121 aagaaacatgttttgtagaaaaattcatgttaaaaataatttaatcagagcag 173
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aagaaacatgttttgtagaaaaattcatgttaaaaataatttaatca-agcag 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 572
Length adjustment: 8
Effective length of query: 165
Effective length of database: 564
Effective search space:    93060
Effective search space used:    93060
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)