Query= MSMg01no140_j03.b1 MSMg01no140_j03.b1 CHROMAT_FILE:
MSMg01no140_j03.b1 PHD_FILE: MSMg01no140_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:20 2005
(205 letters)
>mm_chr3_46320447_46321053
Length = 607
Score = 342 bits (177), Expect = 7e-99
Identities = 199/207 (96%), Gaps = 2/207 (0%)
Strand = Plus / Plus
Query: 1 tagaaaaaacacagcctctataaattcataaatattttcttctggcctctttatgtttgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tagaaaaaacacagcctctataaattcataaatattttcttctggcctctttatatttgc 260
Query: 61 tatagcagtctctttctctcatacag--acacacagacataaaaacaaagtaaataataa 118
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 261 tatagcagtctctttctctcatacagacacacacacacataaaaacaaagtaaataataa 320
Query: 119 tatgaaaatttcaaggtcatattttaatcttattcttatttaacaagtaggtacagtaca 178
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tataaaaatttcaaggtcatattttaatcttattcttatttaacaagtaaatacagtaca 380
Query: 179 tatttgtattgtaaattattttaatgt 205
||||| |||||||||||||||||||||
Sbjct: 381 tatttttattgtaaattattttaatgt 407
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 607
Length adjustment: 8
Effective length of query: 197
Effective length of database: 599
Effective search space: 118003
Effective search space used: 118003
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no140_j03.g1 MSMg01no140_j03.g1 CHROMAT_FILE:
MSMg01no140_j03.g1 PHD_FILE: MSMg01no140_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:20 2005
(363 letters)
>mm_chr3_46433519_46434281
Length = 763
Score = 694 bits (359), Expect = 0.0
Identities = 362/363 (99%)
Strand = Plus / Plus
Query: 1 accatgagatcacaatgagagagcaggcagaatgacacgcatggaccacaataagccaag 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 accatgagatcacaatgagagagcaggcagaatgacacgcatggaccagaataagccaag 260
Query: 61 gtcagattcagattaaaagtaaaggattatgtggatgagaaataggaagtcttagagggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcagattcagattaaaagtaaaggattatgtggatgagaaataggaagtcttagagggt 320
Query: 121 tacaatagcttagaacctacccaacctaggcttgaagcatgttaataaaatacggggtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaatagcttagaacctacccaacctaggcttgaagcatgttaataaaatacggggtct 380
Query: 181 ctacagaatagagtaggtgtagaaatatactgcaatcattggagtacaaggagggtatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacagaatagagtaggtgtagaaatatactgcaatcattggagtacaaggagggtatgt 440
Query: 241 gtgtgtgtgtgtgtgtgcaacctaattcacagtttgattgcttttatttaaattttttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtgtgtgtgtgtgcaacctaattcacagtttgattgcttttatttaaattttttaa 500
Query: 301 actttcatacataaataaatactaaatttaatttctcttttagcccagacctagtgcctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actttcatacataaataaatactaaatttaatttctcttttagcccagacctagtgcctc 560
Query: 361 agt 363
|||
Sbjct: 561 agt 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space: 266916
Effective search space used: 266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
