Query= MSMg01no140_j13.b1 MSMg01no140_j13.b1 CHROMAT_FILE:
MSMg01no140_j13.b1 PHD_FILE: MSMg01no140_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:22 2005
(473 letters)
>mm_chr3_34424668_34425540
Length = 873
Score = 899 bits (465), Expect = 0.0
Identities = 471/473 (99%)
Strand = Plus / Minus
Query: 1 aaggactctaaagattataaaacattaatgagagatatggagaatgatacaaaaagtaga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 759 aaggactctaaagattataaaacattaatgagagatatggagaatgatacaaaaagtaaa 700
Query: 61 aagttataccattttcatggattggaggaaccattcctgttagctagctatactgcccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aagttataccattttcatggattggaggaaccattcctgttagctagctatactgcccat 640
Query: 121 agaagtttgtttgtttatttatgagaaaaggtttcactatgcagccctggctggcctgga 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 639 agaagtttgtttgtttatttataagaaaaggtttcactatgcagccctggctggcctgga 580
Query: 181 actcactatgtagagcaagcaagctggctatcatcaaaaaagctgaagctaagaaatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 actcactatgtagagcaagcaagctggctatcatcaaaaaagctgaagctaagaaatgat 520
Query: 241 gaggaagggcatgcctttggtgagaatgcaaattaatgcagctgctgactctccaagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaggaagggcatgcctttggtgagaatgcaaattaatgcagctgctgactctccaagaag 460
Query: 301 ttaaagagaagagaaatgcagtcaatgtgtaccccacatgctctgcagctcgggccacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttaaagagaagagaaatgcagtcaatgtgtaccccacatgctctgcagctcgggccacca 400
Query: 361 cagcacaaatggccacaaagtaagagaagaagaaaatgtggtggatagccatgtggaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cagcacaaatggccacaaagtaagagaagaagaaaatgtggtggatagccatgtggaatg 340
Query: 421 ctattcggccataaaaatgaaggccaggcatttgtggcctccgtggaggtcaa 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctattcggccataaaaatgaaggccaggcatttgtggcctccgtggaggtcaa 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_j13.g1 MSMg01no140_j13.g1 CHROMAT_FILE:
MSMg01no140_j13.g1 PHD_FILE: MSMg01no140_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:22 2005
(413 letters)
>mm_chr3_34297867_34298679
Length = 813
Score = 733 bits (379), Expect = 0.0
Identities = 406/419 (96%), Gaps = 7/419 (1%)
Strand = Plus / Plus
Query: 1 catgcaatgtattttttatcatattcatctccaactcctccctttgagttctcccagact 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 catgcaatgcattttttatcatattcatctccaactcctccctttgagttctcccagact 253
Query: 61 caccccacctccctacacctctaacttcttgggattgtt-------gcttttcaataact 113
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 254 caccccacctccctacacctctaacttcttgggattgtttgttgttgcttttcaataact 313
Query: 114 tgttgattctaacgtgttctgtctatattctctttagtgttgaaccacatggtttatcta 173
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 314 tgttgattctaacgtgttctgtctatatactctttagtgttgaaccacatggtttatcta 373
Query: 174 ccatgagccttatcattaaaaaatagaaggggactctcttttgtcagaagtcagtagctc 233
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 374 ccgtgagccttatcattaaaaaataggaggggactctcttttgtcagaagtcagtagctc 433
Query: 234 cacagttagagatttcttcctcttctacactggagtgttgactgggttgattttgtgcta 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cacagttagagatttcttcctcttctacactggagtgttgactgggttgattttgtgctg 493
Query: 294 tgggttcatgagtataaagggcctgacatatccagaagacagcattttgttctgatcctc 353
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 494 tgggttcatgagtataaagggcctgacatatccagaagacagcgttttgttctgatcctc 553
Query: 354 ctcacctctggctcttaccaaccctccctcttccaagatgatcccctgagccttggggg 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctcacctctggctcttaccaaccctccctcttccaagatgatcccctgagccttggggg 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
