Query= MSMg01no140_l20.b1 MSMg01no140_l20.b1 CHROMAT_FILE:
MSMg01no140_l20.b1 PHD_FILE: MSMg01no140_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:33 2005
(376 letters)
>mm_chr3_115546794_115547569
Length = 776
Score = 681 bits (352), Expect = 0.0
Identities = 367/372 (98%)
Strand = Plus / Minus
Query: 5 gaattcaaaacaatgcctctgttagacaaagccaccaatcatgttccacatttatcccca 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaattcaaaacaatggttctgttagacaaagccaccaatcatgttccacatttatcccca 517
Query: 65 gggttcagtgaaaggccagctagggaaaggtgggttcctggatggtgcacacaatgtgat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gggttcagtgaaaggccagctagggaaaggtgggttcctggatggtgcacacaatgtgat 457
Query: 125 ttctggaggggtgagtggagcgagcgttcctaagtacacagtgattcctccatcttgact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttctggaggggtgagtggagcgagcgttcctaagtacacagtgattcctccatcttgact 397
Query: 185 tcaccctgccctcacaggaaagatccccgtttgcatgttgagtggagttctctttctgac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tcaccctgccctcacaggaaagatccccgtttgcatgttgagtggagttctctttctgac 337
Query: 245 ctctgaccgaattctgcaaatgctctctgtttttctctctgctgccattttcctaccctg 304
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 336 ctctgaccgaattctgcaaatgctctctgttcgtctctctgctgccattttcctaccctg 277
Query: 305 aactttctcttgctaacttgctcctctatcacggtttttctccttggtcatctctccatc 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 276 aactttctcttgctaacttgctcctctatcacggtttttctccttggtcatctctccacc 217
Query: 365 aaaccttttacc 376
||||||||||||
Sbjct: 216 aaaccttttacc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_l20.g1 MSMg01no140_l20.g1 CHROMAT_FILE:
MSMg01no140_l20.g1 PHD_FILE: MSMg01no140_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:34 2005
(563 letters)
>mm_chr3_115401740_115402706
Length = 967
Score = 957 bits (495), Expect = 0.0
Identities = 555/589 (94%), Gaps = 26/589 (4%)
Strand = Plus / Plus
Query: 1 ctatttttttt-cctccatattgctgatctatggtatacattagttgtcagcgtgcatgc 59
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ctattttttttccctccatattgctgatctatggtatacattagttgtcagcgtgcatgc 238
Query: 60 cagacccctccattgggatcttcttgtaggaaagag-ttacatacttatacgtccatatg 118
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 239 cagacccctccattgggatcttcttgtaggaaagagtttacatacttatacatccatgtg 298
Query: 119 agttcatcccataaaggggcttatgatttgtttccttttctaccttgacggagcctcctc 178
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 299 agttcatcccataaaggggcttatgatttgtttccttttctaccttgacagagcctcctc 358
Query: 179 attctctcataagtggaaagcaaaactctgccttcctgtgagctgttgattgttgatgcc 238
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 359 attctctcataagtggaaagcaaaactctgccttcctgtgggctgttgattgttgatgcc 418
Query: 239 tactgatagccatggaatgtgaatgacatgaatcctgagagattactacagggccagcca 298
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 419 tactgagagccatggaatgtgaatgacatggatcctgagagattactacagggccagcca 478
Query: 299 caagttctctggacaccctgctggttccaaaaa-tgggaaccagagatgcaacctcaaaa 357
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 479 caagttctctggacaccctgctggttccaaaaaatgggaaccagagatgcaacctcaaaa 538
Query: 358 tctgtgctttaccaaaaaaggaattgggaaaggagatattgtcttttttttttt------ 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tctgtgctttaccaaaaaaggaattgggaaaggagatattgtcttttttttttttttttt 598
Query: 412 -------------ggaatggtatcatagcctctgcagtaagactg----tcatggatttc 454
||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 599 tttttttttttttggaatggtatcatagcctctgcagtaaaactgagtgtcatggatttc 658
Query: 455 ctccaaattccagaagaatctatacagtcagatgtaaagaatgtgaatagaacacagaga 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ctccaaattccagaagaatctatacagtcagatgtaaagaatgtgaatagaacacagaga 718
Query: 515 aaccatagtgacccctgatgtattaagcttcctttgtgtaaaaagccct 563
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 719 aaccatagtgacccctgatgtattaagcttcctttgtataaaaagccct 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 967
Length adjustment: 10
Effective length of query: 553
Effective length of database: 957
Effective search space: 529221
Effective search space used: 529221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
