TGGNNAATCTATAATTGCGGCGCTAAACGACTCCTATTTCAAGAGGACCG
CGGAATTCACCTCTTATCAATTACTGGCCTAATTTGTATTTGTAAAAGTA
GAATGCCAGCCTTAGTCCAATAACTTATACTGTTAGCCTCATGCTGACCA
TAATACTTATCAACACTTTTCCTGTGAGCCACAATCAACCTTAGGTATGA
GTAGAAGTGACGCTTGTTACTCCCACTCAAACGGAAAAGTGATTTAATGG
CACCTGTCTTGTTTCTCAAAAGCATGGTCGGAGCGGCAGCTCCAGAAGTT
ACTTTGGGTGGACAGTGAAAACTGAAGAAGGCAGGGTTCTAGATGGCCGT
GTGAGGTGACGGTGTGCCTGTGAGCAGTGTGTGCGCGCTTGTATACATCA
CACCCACAGATACAAAAACTGACAATGTTTCTCCTTTGGTTTAGGTCAGC
GATCCCGTGGCGACTGAGTTCAGCCTGAACACCCACATGTATCTGCTGTC
TAAGAAGAATCTCTGGTTGTCTGATGGGTCCATGGGATTTGGGCAGGAAA
GCGACGTGGCTTTTGCAGAAGGTAACACTCATTAGGTGAAAGAGTGGTTC
TGTTGTCCTGTGTGTCTGGGATGTCCTGTGGTCCTGTGTGTCTGGGATGT
CCTGTGGTCCTGTGCGACTGGTATGTTCTGTGGTCCTGTGAGTCTGTGAG

NNNCCCCGATGAAGTGNTAGGCCTGGCGGCCGCCTGAATCGGACTTGAGG
TGAACTATAGAAGTTTTCAGAAATTCTCATATTGGTTCCCTGAACTGTAG
AGTGAGGGCTATTATGGTTGGAAAGGCCAAATGGAAGCCTTTAGAGTTGC
CTCTGCCAAAGAAAATAGTGAATCAAAAACAGTATCGTATTCCTGGAGGC
ATTGCAGAAATTATTGCCACTATCAAGGACTTGAAAGATGCAGGGGTGGT
GGTTCCTATCACATCTCCGTTTAACTCTCCTATCTGGCCAGTGCAGAAAA
CAGATGGATCATGGAGAATGTTTTTTTATTATCGAAAACTAAATCAGGTA
GTAACTCCAATTGCAGCCGCTCTCCCCCACGTAGTTTCTTTACTTGAGCA
AATTAACACATCTCCTGCCACCTGACATGCGGTTATTGATCTGGCTAATG
CCTTCTTCTCAGTATCTGACCCATATGACCACCATAATCACTTTGCTTTT
CTTCGTCATGCCCATCACGTCTACCTTCTTGTTTCTACCCTCACGATTCC
TACCTCCTTTTATCCTGTTGCCTCCACTTATCCCCTTACCGACCTTTCAT
CCCCCGTCCTTTTTTACAACCTCCCCATTCGATCCAATACGTAGCCCCTT
CCCCTTCTCGCCGTTTTATCATTACATTGCCCTTATCATTCTCTTCCCTT
TTCCTTTCC

Query= MSMg01no140_m03.b1 MSMg01no140_m03.b1 CHROMAT_FILE:
MSMg01no140_m03.b1 PHD_FILE: MSMg01no140_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:35 2005
         (560 letters)



>mm_chr3_53324693_53325653
          Length = 961

 Score =  992 bits (513), Expect = 0.0
 Identities = 543/553 (98%), Gaps = 3/553 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacctctt-at-caattactggcctaatttgtatttgtaaaagtagaatgccagc 62
           ||||||||||||| || | ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 756 gaattcacctcttaatac-attactgacctaatttgtatttgtaaaagtagaatgccagc 698

                                                                       
Query: 63  cttagtccaataacttatactgttagcctcatgctgaccataatacttatcaacactttt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 cttagtccaataacttatactgttagcctcatgctgaccataatacttatcaacactttt 638

                                                                       
Query: 123 cctgtgagccacaatcaaccttaggtatgagtagaagtgacgcttgttactcccactcaa 182
           ||||||||||||||||||||||||| ||||||||||||||| ||  ||||||||||||||
Sbjct: 637 cctgtgagccacaatcaaccttagggatgagtagaagtgacactcattactcccactcaa 578

                                                                       
Query: 183 acggaaaagtgatttaatggcacctgtcttgtttctcaaaagcatggtcggagcggcagc 242
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 acagaaaagtgatttaatggcacctgtcttgtttctcaaaagcatggtcggagcggcagc 518

                                                                       
Query: 243 tccagaagttactttgggtggacagtgaaaactgaagaaggcagggttctagatggccgt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tccagaagttactttgggtggacagtgaaaactgaagaaggcagggttctagatggccgt 458

                                                                       
Query: 303 gtgaggtgacggtgtgcctgtgagcagtgtgtgcgcgcttgtatacatcacacccacaga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gtgaggtgacggtgtgcctgtgagcagtgtgtgcgcgcttgtatacatcacacccacaga 398

                                                                       
Query: 363 tacaaaaactgacaatgtttctcctttggtttaggtcagcgatcccgtggcgactgagtt 422
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tacaaaaactgaaaatgtttctcctttggtttaggtcagcgatcccgtggcgactgagtt 338

                                                                       
Query: 423 cagcctgaacacccacatgtatctgctgtctaagaagaatctctggttgtctgatgggtc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cagcctgaacacccacatgtatctgctgtctaagaagaatctctggttgtctgatgggtc 278

                                                                       
Query: 483 catgggatttgggcaggaaagcgacgtggcttttgcagaaggtaacactcattaggtgaa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 catgggatttgggcaggaaagcgacgtggcttttgcagaaggtaacactcattaggtgaa 218

                        
Query: 543 agagtggttctgt 555
           |||||||||||||
Sbjct: 217 agagtggttctgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 961
Length adjustment: 10
Effective length of query: 550
Effective length of database: 951
Effective search space:   523050
Effective search space used:   523050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)