Query= MSMg01no140_o21.b1 MSMg01no140_o21.b1 CHROMAT_FILE:
MSMg01no140_o21.b1 PHD_FILE: MSMg01no140_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:49 2005
(574 letters)
>mm_chr3_128918986_128919963
Length = 978
Score = 1091 bits (564), Expect = 0.0
Identities = 573/578 (99%), Gaps = 4/578 (0%)
Strand = Plus / Minus
Query: 1 ttcgtcgttgcctgacaatttctttatttttctttttatttttcctcccccacct----t 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 778 ttcgtcgttgcctgacaatttctttatttttctttttatttttcctcccccaccttttct 719
Query: 57 ttctttcttctacacagaacgtgttttctaaaacaggcggttctggagtctgctgagtcc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttctttcttctacacagaacgtgttttctaaaacaggcggttctggagtctgctgagtcc 659
Query: 117 ctctttcagaatcttaataatcttgaacattccaaccgaccggcgttaaaccaggatact 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ctctttcagaatcttaataatcttgaacattccaaccgaccggcgttaaaccaggatact 599
Query: 177 gctactgggtaatgtgtttaagctcatttttttttcttttttctttttggccagtccata 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gctactgggtaatgtgtttaagctcatttttttttcttttttctttttggccagtccata 539
Query: 237 aaggggcagatttgctacaatgtaaaggtaagctgtctttataaatctatgactataatt 296
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aaggggcagatttgctacaaagtaaaggtaagctgtctttataaatctatgactataatt 479
Query: 297 aagcaaggggtgtgagcacagccttcactgagctgaactttcttgagaagataaataaac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aagcaaggggtgtgagcacagccttcactgagctgaactttcttgagaagataaataaac 419
Query: 357 caaattgaaacgtctttcttctcctttttttcgaaaagcgctaacagaatagtcgttact 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caaattgaaacgtctttcttctcctttttttcgaaaagcgctaacagaatagtcgttact 359
Query: 417 tccagatttacaaaactaggtaatagactgtgagagaaatctgaatggctgaaaaacccg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tccagatttacaaaactaggtaatagactgtgagagaaatctgaatggctgaaaaacccg 299
Query: 477 ccccggtaaagaccagcgagcaactcttgctagtcaagggagaaaaggctgggccgggct 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccccggtaaagaccagcgagcaactcttgctagtcaagggagaaaaggctgggccgggct 239
Query: 537 aggcgcgaaggttctccagtgaagccaagccttgcgtg 574
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aggcgcgaaggttctccagtgaagccaagccttgcgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 978
Length adjustment: 10
Effective length of query: 564
Effective length of database: 968
Effective search space: 545952
Effective search space used: 545952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_o21.g1 MSMg01no140_o21.g1 CHROMAT_FILE:
MSMg01no140_o21.g1 PHD_FILE: MSMg01no140_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:49 2005
(577 letters)
>mm_chr3_128779808_128780784
Length = 977
Score = 1108 bits (573), Expect = 0.0
Identities = 576/577 (99%)
Strand = Plus / Plus
Query: 1 ctagatattttagttgagaaacagaagaaagagttgactttcctaactgtagaagtattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagatattttagttgagaaacagaagaaagagttgactttcctaactgtagaagtattg 260
Query: 61 cctaacaatgagcaaatgcgttgttaacaagacatattagagatcatttaaaaatcactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaacaatgagcaaatgcgttgttaacaagacatattagagatcatttaaaaatcactt 320
Query: 121 ggtgggggagggtttgcagaagggagtctaagaaaggggacaacatttgaattgtaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgggggagggtttgcagaagggagtctaagaaaggggacaacatttgaattgtaaata 380
Query: 181 aataaaataattaatcaaaaaatcacatagtactggcttcaactattttcactattagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaaataattaatcaaaaaatcacatagtactggcttcaactattttcactattagat 440
Query: 241 ttttcagttttacaacagaatgcacagtttattgcgcagaattactaccaaaaacctgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttcagttttacaacagaatgcacagtttattgcgcagaattactaccaaaaacctgaa 500
Query: 301 acaacatattttgcctttcagttatcgagttccttaactgaattattaaaattgcttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaacatattttgcctttcagttatcgagttccttaactgaattattaaaattgcttttg 560
Query: 361 atgcttaagtggcccttctgtttctcaactaaagtctagaaatcttttttatatttctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcttaagtggcccttctgtttctcaactaaagtctagaaatcttttttatatttctct 620
Query: 421 tttatacttcttcacctcatgtttaatattatgtgtacactctactcattaaaaagtaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttatacttcttcacctcatgtttaatattatgtgtacactctactcattaaaaagtaaa 680
Query: 481 aaggcacaaagaattaaagtttatgtgcacgcacactctatattgcgtatgaacacttgc 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 aaggcacaaagaattaaagtttatgtgcacgcacactctatattgtgtatgaacacttgc 740
Query: 541 acatgctcacacacatgcctgtgccttgtcatctcca 577
|||||||||||||||||||||||||||||||||||||
Sbjct: 741 acatgctcacacacatgcctgtgccttgtcatctcca 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
