Query= MSMg01no141_a07.b1 MSMg01no141_a07.b1 CHROMAT_FILE:
MSMg01no141_a07.b1 PHD_FILE: MSMg01no141_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:57 2005
(742 letters)
>mm_chr3_92953489_92954630
Length = 1142
Score = 1396 bits (722), Expect = 0.0
Identities = 737/742 (99%)
Strand = Plus / Plus
Query: 1 gctgttttatctctggtatctgtccattgcatccataaaggcttagaagctggccccagc 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 gctgttttatctctggtatctgtccattgcatcaataaaggcttagaagctggccccagt 260
Query: 61 gtgttagtcaatacctactgatgcgataaactgagggctctagagttctaatgttgaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgttagtcaatacctactgatgcgataaactgagggctctagagttctaatgttgaact 320
Query: 121 gaacatagccccacctctcaaggaacactgggttgaaagaatgtatgtgaccctagagtt 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gaacatagccccacctctcaaggaacactgggttgaaagaatgtatgcgaccctagagtt 380
Query: 181 agaaagagctgaatagaggagagagcacattttatacttggcagaggtgggtcagggatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaagagctgaatagaggagagagcacattttatacttggcagaggtgggtcagggatg 440
Query: 241 ccttcttccataagatgattatttgtaatagccctcaatggaccactaagaaatacaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttcttccataagatgattatttgtaatagccctcaatggaccactaagaaatacaaat 500
Query: 301 acaattactgtcattcatttcctctaattctagaatgttaagactctattcctatgcaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaattactgtcattcatttcctctaattctagaatgttaagactctattcctatgcaag 560
Query: 361 gtcacagaggttattacaaaatggatgaagaccctccagagctgtgctgggaagggatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcacagaggttattacaaaatggatgaagaccctccagagctgtgctgggaagggatga 620
Query: 421 ggtcatgcattcccagggacttagtcactagtgagaggccctaatcttcccctcccattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtcatgcattcccagggacttagtcactagtgagaggccctaatcttcccctcccattc 680
Query: 481 tgtgccaacacttcccctccatgttgccctacttgctgggtatcaacaagctgtataaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 tgtgccaacacttcccctccatgttgccctacttgctgggtatcaacaagctgtatagca 740
Query: 541 gaaactctcaactattctttactttaaaaattaccagggaggtaagagtttttcattttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaactctcaactattctttactttaaaaattaccagggaggtaagagtttttcattttg 800
Query: 601 tttttattggtatatgtatgtacctgggtcaatgcatgtgcacctgtagaggctagaagt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttttattggtatatgtatgtacctgggtcaatgcatgtgcacctgtagaggctagaagt 860
Query: 661 agacattagatatccccgattctggggctacagatcgttgtgagctgccattgggattgc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 861 agacattagatatccccgattctggggctacagatcgttgtgagctgccattgagattgc 920
Query: 721 tggaagtggaacttgcacatct 742
||||||||||||||||||||||
Sbjct: 921 tggaagtggaacttgcacatct 942
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1142
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1132
Effective search space: 828624
Effective search space used: 828624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_a07.g1 MSMg01no141_a07.g1 CHROMAT_FILE:
MSMg01no141_a07.g1 PHD_FILE: MSMg01no141_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:57 2005
(699 letters)
>mm_chr3_93054167_93055264
Length = 1098
Score = 1290 bits (667), Expect = 0.0
Identities = 691/699 (98%), Gaps = 1/699 (0%)
Strand = Plus / Minus
Query: 1 aaaactaaattaaaagcaatttttatttccctggtatttgataaaaaagaatccatttca 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 898 aaaactaaattaaaagcaatttttatttgcctggtatttgataaaaaagaatttatttca 839
Query: 61 tgaagtaataatgatgtatgcagtaattgatttgcatttgattaatacaagttaggaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tgaagtaataatgatgtatgcagtaattgatttgcatttgattaatacaagttaggaaaa 779
Query: 121 tttggtataaatttattcacagcaggaaactggttcattttgctaggaggtatatatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tttggtataaatttattcacagcaggaaactggttcattttgctaggaggtatatatgtt 719
Query: 181 tatgtaacatgcctataataaaaatgaggaaacgtattaatattattttaaaggttggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tatgtaacatgcctataataaaaatgaggaaacgtattaatattattttaaaggttggga 659
Query: 241 ttttatgttttctccttaaatctcagcttccactgcaccaacttttttcctctggttcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttttatgttttctccttaaatctcagcttccactgcaccaacttttttcctctggttcta 599
Query: 301 tttccaaaagacctcatggaatgacaaagcactgggctatatagcaggtgtctttgaata 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 598 tttccaaaagacctcatggaatgacaaagcactgggctatatagcaggtgcctttgaata 539
Query: 361 aagtttacacttatgattatgtaagattgagaaccaacgctcctgaaactgaacatgtaa 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 538 aagtttacacttatgattatgtaagattgagaacc-acgctcctgaaactgaacatgtaa 480
Query: 421 agccactcgattctaggatcagctttgcagaaggccgatgggttctcctctgtgcgggca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 agccactcgattctaggatcagctttgcagaaggccgatgggttctcctctgtgcgggca 420
Query: 481 tcggtgagcattatgctcacacaattctggaataacaaggcacctgtaaagagacagttt 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tcggtgagcattgtgctcacacaattctggaataacaaggcacctgtaaagagacagttt 360
Query: 541 agtcttcactttggattatcttagtgtcactttcagttgcgaagttatattaaaagcaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agtcttcactttggattatcttagtgtcactttcagttgcgaagttatattaaaagcaat 300
Query: 601 tcttgatgggcagtgctggggggatgcagccttctccccctcatttatgccctctccagg 660
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 299 tcttgatgggcagtgctggggggatgcagccctctccccctcatttatgccctctccagg 240
Query: 661 ttccccagaattaaactaaaataaaacagagaactggca 699
||||||||||||||||||||||||| |||||||||||||
Sbjct: 239 ttccccagaattaaactaaaataaagcagagaactggca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1098
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1088
Effective search space: 749632
Effective search space used: 749632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
