Query= MSMg01no141_b17.b1 MSMg01no141_b17.b1 CHROMAT_FILE:
MSMg01no141_b17.b1 PHD_FILE: MSMg01no141_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:08 2005
(286 letters)
>mm_chr3_8729864_8730549
Length = 686
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%)
Strand = Plus / Plus
Query: 1 gcaaacgcatttgccctgtaatatctctaataagaacattggcaccacccaaaagagcct 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaaacgcatttgctctgtaatatctctaataagaacattggcaccacccaaaagagcct 260
Query: 61 cacacttaaagcaaggcaagaaggctggaagcgtggtttagtgggtggggtgtttatcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacttaaagcaaggcaagaaggctggaagcgtggtttagtgggtggggtgtttatcta 320
Query: 121 agtttaaggaactgagtgcagatcttcagcacctacctaaaacatggaggtggccagtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtttaaggaactgagtgcagatcttcagcacctacctaaaacatggaggtggccagtgt 380
Query: 181 acctctgatgaagtgctaggggatatcagggacaggagggctattggcaccagactagct 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctctgatgaagtgctagaggatatcagggacaggagggctattggcaccagactagct 440
Query: 241 aaaaatctgcaagagagaccctggttcaagagaacatggtagacat 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaatctgcaagagagaccctggttcaagagaacatggtagacat 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no141_b17.g1 MSMg01no141_b17.g1 CHROMAT_FILE:
MSMg01no141_b17.g1 PHD_FILE: MSMg01no141_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:08 2005
(681 letters)
>mm_chr3_8892205_8893284
Length = 1080
Score = 897 bits (464), Expect = 0.0
Identities = 484/492 (98%), Gaps = 5/492 (1%)
Strand = Plus / Minus
Query: 190 taacctgtgggtcaccctccctgctgccccccccaccccccccgttggggggtcaattga 249
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 1080 taacctgtgggtcaccctccctgctg-ccccccca---cccccgttggggggtcaattga 1025
Query: 250 ccctttcacaggggtcacttaagataataggaaaacatttatttatactatttataacag 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 ccctttcacaggggtcacttaagataataggaaaacatttatttatactatttataacag 965
Query: 310 ggttcataacagcataattatagttatgaagtagcagtgaaaataattttatggttgagg 369
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 ggttcataacagcagaattatagttatgaagtagcagtgaaaataattttatggttgagg 905
Query: 370 gtcaccacaacatgaggaacgtatatatgaattaaagataatgttgcatcctgagagttg 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 gtcaccacaacatgaggaacgtatatatgaattaaagataatgttgcatcctgagagttg 845
Query: 430 attcagtccagggtacagagaataagccaatacaaatgatggcatgttcattcttttgac 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 attcagtccagggtacagagaataagccaatacaaatgatggcatgttcattcttttgac 785
Query: 490 tgctttcttcaggaacggagactaggggtcagtgtgtccattgctgtgtcaggcaggcta 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 784 tgctttcttcaggaacggagactaggggtcagtgtgtccattgctgtgtcaggca-gcta 726
Query: 550 ttgcagaggagctgctgaaatgagggcggaaggatgaaggacagcaagaggctccatcac 609
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 725 ttgcagaggagctgctgaaatgagggtggaaggatgaaggacagcaagaggctccatcac 666
Query: 610 cagtgagagcccatgtctcctggaacctagatgctttagtgagcctcggttaaggacatg 669
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 665 cagtgagagcccatgtctcctggaacctagatgctttagtgagcctgggttaaggacatg 606
Query: 670 tgatgtgagagg 681
||||||||||||
Sbjct: 605 tgatgtgagagg 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1080
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1070
Effective search space: 717970
Effective search space used: 717970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
