BAC Information

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BAC

Clone NameMSMg01-141I02
Chromosome3 (Build37)
Map Location 73,889,500 - 73,890,231
singlet/doubletsinglet
Overlap genenone
Upstream geneBche, LOC667425
Downstream geneLOC619764, LOC667434, LOC100041551, EG667459, BC050789
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141I02.T7 (MSMg01no141_i02.b1)MSMg01-141I02.TJ (MSMg01no141_i02.g1)
ACCAG346360AG346361
length1,2231,206
length of high quality
(start - end)		672 (94 - 765)730 (93 - 822)
definitionCHROMAT_FILE: MSMg01no141_i02.b1 PHD_FILE: MSMg01no141_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:59 2005CHROMAT_FILE: MSMg01no141_i02.g1 PHD_FILE: MSMg01no141_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAGTTATTGNNNAAACACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCGGCTCTGGTTGCTGAGGCAATTAAAAGAGCAGAACCTA
AAAGTGTGATCATGGGAGAGCTCGTTCTGCCCCTTGTTTGCGGTGGGATG
TCATAGGGTCACTGGTGAAAAGCCAATTCTCCTCTCCCCTGTCATTGTGC
TTCCTGTAGCAAGATGGATATCTGGCCCCACTCCTATCCTTGTCAGCGTG
TTTGAGCTGGCACTGTACGATTGAGAACAGGAGAGCCGGCCACTCCACTT
ACTATATGCAATGCTCTCCAGAGCAGAACAGACTCTGCAATTTCTCTGCA
CAACACAGTAAAGCTGCCTCTGGTGGCAGGGACACAGTTGAATTGTCCCT
AAGGGAATGAGCTTTGTATAGCTGACCCTGAATTTCACCTAGGCAGCATG
GAAGAATTGCCTTTGATGGCATTAAAGTAAGTAAGCTGGCTCTTTCCATC
ACCAGCTTCATCACTCTAGAGAGCAATCCCTGAAGCTTAACTGAGCAGCA
GAGTAGAGCTGGCCTTTGTTGTATAGGTTTGGGAAAGCAGATCTTAGTGG
CAGGAGAGCTGGTGAGTTGACCTCATCCCTTGCCTGGGAAGTTCAGGTGA
GCTGACTCGGGAGGTGTGCGTCCAAGGGAGTTGACTCTGATGGTACATGC
TCCAGTGTAGTGGAATGCTAGGGTAGTGAAGTGAAAGTGGGTGCCTGGGT
GGGGAAGCGCCCTCATAGAAGCAGGGAGAGGGGAATGCAATAGGGTTTTT
TTCTGGAGGGGAAACTGGGAAAGGGGATCACATTTGAAATGTAAAAATAT
AAAATATGCAATTATTAAATAAATAAATTCTATGCAGTTAAACCCAGACC
CCAACATCAAACAAAGAACTTACCTGGGCTGGGTCCATTGCTCCTGGACA
CAAATGTCTTGGTTTGCCCCCAAAACGTTAAAGAAGTTCTTTAAATCCTT
TCCAAAATTTTTTTCATTTAAAAAAATTAACTCTTGTTTTTAAATTTTTT
TAATTTTCTCCCTCTGNTTTTTTTATTATCTTCTTCTCCTCTTTTTCATA
CTTTTTATACTTAATATTTATATTTCACTAATTCTCTTTTTCATCTCTTC
TCTTTTTTTTTTACCAAATTTTTCCATTCATACTCTTATTTCATCTTCTC
ATTTTCTTACTTCCTTTTCATCT

NCCTTTATTATNNNAAAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAAGCAAAAGTATGTT
AGNAAAGGAATACTTAATTCCGTTTAACTCCTTAATATGCCTTAAGATGA
ACCCACCTTCCTATGGATGCTCACTTAGACTAATGACTTCCCAAAACTGT
AATGTTAGATCTCCACCCAGATCAGAGATAAAATTCTCTCGGTCAATACC
AGGTTTTTAGTAGACCTTTGCTGCTTCTTTAACACTATGACTATATTAAG
CATGGTAAATAGTCTTAATTGATATTGTCTGTACAGCAAGCATTAGCTTA
ATATTTTATATACATAATTTCATTCTGCATTTTGATCAATCCAGTGAAAT
AAGCAGTTTGGTTGACATGGCTTGGAAGGGAACATGCTTAAATTTGTTTT
GTATCAGAACTGACTTTTACTGATTTTATTGCCTTCTCTCTCTGTTAGTT
ATTTCAAAAATAAAGCCAATGTCAAAAAATACATACTATTTTCATGTAAA
CTAATGTATTGTAGCACTGAGTATGTTGTTCCATACTTCAAAATGCCAGC
TGATTTACTACAGTACTTTATGCTTGAGGTTAATAGTAAAGACTTTATTT
TTATTTTGTTACTGTTTTTTATTTAATTTTTAAATATAATACATTATTTT
GAAAATGCTTTCCTCCACTAACTCCTTCGAGATCTTCACCATATCCTTAC
TTACACACCAACATGATATCTCTCTCTCTCTCTCTCTCTCTCTCTCACTC
TCTCTCAAAAACAAACAAACAAACAACAACAACTAAAACAACAAATTCCA
AATAAACCTCAATAGGGTGAAAAAAATTACCAGGCCAAATGAAACAAAAA
CCTTACCCAAACAAACTTCATTAGGAAGTCTGTTTATGTTGCCCAATTAC
TCCTAAGCATGAACCCATCTTAATGTTTCCTGGACTCCGGGGAACCCCCA
TTGAAAAAAATTTGAAATTTCCCTTTTTCCAATTGAAATAAACCGGCCCC
AAACCTTTTTTGGTTTAAAAAAAGGGAAATTTGTCCTTTTTTTTTCCCCC
CTTTTTTTTAAAGGGGAAAAAACTTGTAAAATGCTCCTCTGTGGAGAAAA
AAAATAGAATGTCTCTTTTTTAAAAATTCCATAAATATTTGTCTTCTTCT
TTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_i02.g1 MSMg01no141_i02.g1 CHROMAT_FILE:
MSMg01no141_i02.g1 PHD_FILE: MSMg01no141_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:59 2005
         (730 letters)



>mm_chr3_73889300_73890433
          Length = 1134

 Score = 1284 bits (664), Expect = 0.0
 Identities = 715/735 (97%), Gaps = 8/735 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatgttagnaaaggaatacttaattccgtttaactccttaatatgccttaagatgaac 60
           |||||||||| ||||||||||||||||| |  ||||||||||||||||||||||||||||
Sbjct: 201 agtatgttagtaaaggaatacttaattctgcctaactccttaatatgccttaagatgaac 260

                                                                       
Query: 61  ccaccttcctatggatgctcacttag----actaatgacttcccaaaactgtaatgttag 116
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 261 ccaccttcctatggatgctcacttagtcagactaatgacttcccaaaactgtaatgttag 320

                                                                       
Query: 117 atctccacccag-atcagagataaaattctctcggtcaataccaggtttttagtagacct 175
           |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 atctccacccagga-cagagataaaattctctcgggcaataccaggtttttagtagacct 379

                                                                       
Query: 176 ttgctgcttctttaacactatgactatattaagcatggtaaatagtcttaattgatattg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgctgcttctttaacactatgactatattaagcatggtaaatagtcttaattgatattg 439

                                                                       
Query: 236 tctgtacagcaagcattagcttaatattttatatacataatttcattctgcattttgatc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctgtacagcaagcattagcttaatattttatatacataatttcattctgcattttgatc 499

                                                                       
Query: 296 aatccagtgaaataagcagtttggttgacatggcttggaagggaacatgcttaaatttgt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatccagtgaaataagcagtttggttgacatggcttggaagggaacatgcttaaatttgt 559

                                                                       
Query: 356 tttgtatcagaactgacttttactgattttattgccttctctctctgttagttatttcaa 415
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttgaatcagaactgacttttactgattttattgccttctctctctgttagttatttcaa 619

                                                                       
Query: 416 aaataaagccaatgtcaaaaaatacatactattttcatgtaaactaatgtattgtagcac 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaataaagccaatgtcaaaaaatacatactattttcatgtaaactaatgtattgtagcac 679

                                                                       
Query: 476 tgagtatgttgttccatacttcaaaatgccagctgatttactacagtactttatgcttga 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgagtatgttgttccatacttcaaaatgccagctgatttactacagtactttatgcttga 739

                                                                       
Query: 536 ggttaatagtaaagactttatttttattttgttactgttttttatttaatttttaaatat 595
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 740 ggctaatagtaaagactttatttttattttgttactgttttctatttaatttttaaatat 799

                                                                       
Query: 596 aatacattattttgaaaatgctttcctccactaactccttcgagatcttcaccatatcct 655
           |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 800 aatatattattttgaaaatgctttcctccactaactccttcgagatctttaccatatcct 859

                                                                       
Query: 656 tacttacacaccaacatgatatctctctctctctctctctctctctctcactctctctca 715
           |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||  |
Sbjct: 860 tacttacacaccaacatgatctctctctctctctctttctctctctctcactctctc--a 917

                          
Query: 716 aaaacaaacaaacaa 730
           |||||||||||||||
Sbjct: 918 aaaacaaacaaacaa 932


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 1134
Length adjustment: 10
Effective length of query: 720
Effective length of database: 1124
Effective search space:   809280
Effective search space used:   809280
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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