BAC Information

Click to search

BAC

Clone NameMSMg01-141L19
Chromosome3 (Build37)
Map Location 98,978,953 - 99,136,340
singlet/doubletdoublet
Overlap geneWars2, Tbx15
Upstream geneLOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557
Downstream geneM6pr-ps, Spag17, LOC623045, Wdr3, Gdap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141L19.T7 (MSMg01no141_l19.b1)MSMg01-141L19.TJ (MSMg01no141_l19.g1)
ACCAG346533AG346534
length1,2201,211
length of high quality
(start - end)		194 (473 - 666)671 (133 - 803)
definitionCHROMAT_FILE: MSMg01no141_l19.b1 PHD_FILE: MSMg01no141_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:29 2005CHROMAT_FILE: MSMg01no141_l19.g1 PHD_FILE: MSMg01no141_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,136,147 - 99,136,340)(98,978,953 - 98,979,615)
sequence
CCGGCCCATNNNNAAAATTGGGCGCTAAGACTCCTATGGGAGAGGATCCG
CGGAATTCCATAAAATTTTNAAGGCCATTGAGGTTCTCCNNGNGNANNGN
NNGNAGNNANNNNNCCCCTTTAAACCTTCCANANNAGANGNGGNNGGGAA
GANANANAGAGTTCCCTTNNCCNCNANNCCCAGGGCNCCCCCGGCGACAG
NCAGCANCNANACCACGGGCNNNCCCNCNAGCNGAGCAACAAGGGCCCCG
GAGGGAAAAAGGNANCNCCCAAGGCNACNNCNAGACCCNACAAAAGCACC
CCCACCCNNCAGCNNCGGGGCCCANNNNGGCCNTTGCTTCANGCGNCANA
GAGNAGNCACCCCCAAGGGCANAANNCCCCAGNNCANNACNAGGGGACCN
GGNNCTTTTTTTTTTCGNNANGNCNNAGGNNCAACCAACCCGCGGAGAAC
ACCCCCCTGNCTCTTACCCCCACCGAAAACTTGGTGGTATTCTTCTCCAG
GAATCTAGGAAGCACAGGCAAGCCTGATCTCTGCAGCAGATCACATGGCC
CCTTGGATGTATGGATGTAAGCAGCAATTCTGTCAAATCAGAATCTAACA
GAAGTAAGCAGGCTCAGATTTGCATCTGAATTGCCCTTAGCTTTTCTAAC
TAATCACAAACTTGATCTTTCTTCCAGAATTCTCCTTGGGTATCCAAACC
TAGCCCTTGGTTTCTGGTCTCCTCCTTTTGCCACAGGTTGGAATGAGCCC
TTCTTATTCCTTTAATTAAAAAANTNACTTAATTGTTTTTTTGTAAAACA
ACCCCCACTCAACAGAGAGGGNTTTGCAACTAGCCGAACAGTTTCCAATT
AACACTGACCGCCTGGCACCGGGCAAGAAAGGGAAAACCAAAAAGGAAAA
ACTGTGGAAAAGCACAGGTCCGGATTGGCGGACTCAACCAAGAGAAGGGC
CCAGGGAACCAAACCAGGGGAGACAACAATGCCCAGGGGTAAACCGGCAA
AATTGTCCGGAAGATGGGGGACCAGTGTTAGGGCCGAATGAAAGGGGGAA
TCTTCCCCGGAAGAAAACGAATTCTAACCCTTTAGGGCCTCCCGGGGCTT
AGCTTTACCCCCAACTGGAAAAGCCGGTAAGGCTAACCTCCGGGGAAGGC
GGCCATAAATCAATGGGGTGTCTCCCTTCCGAAACCCGCCNNTGAGACTC
ACCTCTCCCTCATTCCATTT

NCCACTCCTTTTTNAACGCAGGGATGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGACTGAAGNANTGNCT
GTTTTCGGTGTCATTTTGGCCTTATAAATCAGCATTGCCCCAAGGCAGAC
ACTGTGCTGTGTATTTTACTGTCCCCAGCACAGCGGCTCCTCCATCTCTG
CCCCCAGGCTGACGCATTGGGGAAAAGGAGAGAGGGAAACCATCAATCTT
CCCAGTTGCTCGTGTCAGCGGCGAGTCCTTCCCCCTTCCTGTTGGCTGTC
TCTCTCACCACCTGTGTTTAGAATTAGCACTGAAGCTGCTGCCCAGATGA
ATGAGAACCACTGTCCTTGTCACCTGCCCTGGCATGGGCCATCACTCCTC
AATGAAACAAGTACATCAAGCAGTTATCTCGAGTGGGAACAGGGAAGGAG
AGAGAGTCACATGTCTACCTTAGACGACTTTTAATAACATAAAATTAAAG
TAGGATTCAGGTCATATATTTTAGAAGGTTGACATAATCATTGGCTCCAA
GAAGTAAAAGCCAATAATTTTCCTGAGCACCATCCTCTCAGGATTGTTTG
CAGCCAGAGCTGATGTACCTGGTTCAAGGCCTGTCTGTTATCTCCTATCC
ATTCACTACTCTCTCAACCCTCCTGAGACTCGGTTTGTTCTTTTGTAAAA
TAACTACATAGGAGCTTTTGCAAGGATTGAGACACCATTCATAACTCTTG
TTATGTTGCTATTACCGAAAGTTCTCAGCAAATGTTAGCTAGTGTTGGAC
CTCCTTGCTCCAATAAGAAAGTAGCATCAGACAGGTTAAGTGATATAGGA
ATTAGAAGACATTGAAGGAATTTGGCCCTAGCACTCTCTGATTCACAAAA
TTCACATCCTTCAGGTTACCTTCATTGTTTCTAGTGTATTTAAAGTTTAC
CGAATTTAATAACTTTAATATGGAGAATGGATAACCCACTAAAACCAAGT
TTTTATTTCCCAGGAAATAAAAGAAAATTGCCTTTTCTTGTGTGGAAGAA
AATCCCATTTAATTGGCAATCCTTCTAGCTTTTTTGTCCCCAAAATGACC
GGGGCCTCTTCTTTAAATTCCTTTTTAAATTGAAGGGCCAAAATAATTTT
CGCCTTCTTTAATAAAAAAAGTTTTTCTAATTAATTACCATATTTCCTGA
TTCAGGTGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_l19.b1 MSMg01no141_l19.b1 CHROMAT_FILE:
MSMg01no141_l19.b1 PHD_FILE: MSMg01no141_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:29 2005
         (194 letters)



>mm_chr3_99135947_99136540
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgaaaacttggtggtattcttctccaggaatctaggaagcacaggcaagcctgatctct 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ccgaaaacttgttggtattcttctccaggaatctaggaagcacaggcaagcctgatctct 335

                                                                       
Query: 61  gcagcagatcacatggccccttggatgtatggatgtaagcagcaattctgtcaaatcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gcagcagatcacatggccccttggatgtatggatgtaagcagcaattctgtcaaatcaga 275

                                                                       
Query: 121 atctaacagaagtaagcaggctcagatttgcatctgaattgcccttagcttttctaacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atctaacagaagtaagcaggctcagatttgcatctgaattgcccttagcttttctaacta 215

                         
Query: 181 atcacaaacttgat 194
           ||||||||||||||
Sbjct: 214 atcacaaacttgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no141_l19.g1 MSMg01no141_l19.g1 CHROMAT_FILE:
MSMg01no141_l19.g1 PHD_FILE: MSMg01no141_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:29 2005
         (671 letters)



>mm_chr3_98978745_98979815
          Length = 1071

 Score = 1259 bits (651), Expect = 0.0
 Identities = 660/663 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   caaggcagacactgtgctgtgtattttactgtccccagcacagcggctcctccatctctg 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 caaggcagacactgtgctgtgtattttactgtccccagcacagcggctcctccatctctg 268

                                                                       
Query: 69  cccccaggctgacgcattggggaaaaggagagagggaaaccatcaatcttcccagttgct 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cccccaggctgacgcattggggaaaaggagagagggaaaccatcaatcttcccagttgct 328

                                                                       
Query: 129 cgtgtcagcggcgagtccttcccccttcctgttggctgtctctctcaccacctgtgttta 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cgtgtcagcggcgagtccttcccccttcctgttggctgtctctctcaccacctgtgttta 388

                                                                       
Query: 189 gaattagcactgaagctgctgcccagatgaatgagaaccactgtccttgtcacctgccct 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaattagcactgaagctgctgcccagatgaatgagaaccactgtccttgtcacctgccct 448

                                                                       
Query: 249 ggcatgggccatcactcctcaatgaaacaagtacatcaagcagttatctcgagtgggaac 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggcatgggccatcactcctcaatgaaacaagtacatcaagcagttatctcgagtgggaac 508

                                                                       
Query: 309 agggaaggagagagagtcacatgtctaccttagacgacttttaataacataaaattaaag 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 agggaaggagagagagtcacatgtctaccttagacgacttttaataacataaaattaaag 568

                                                                       
Query: 369 taggattcaggtcatatattttagaaggttgacataatcattggctccaagaagtaaaag 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 taggattcaggtcatatattttagaaggttgacataatcattggctccaagaagtaaaag 628

                                                                       
Query: 429 ccaataattttcctgagcaccatcctctcaggattgtttgcagccagagctgatgtacct 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ccaataattttcctgagcaccatcctctcaggattgtttgcagccagagctgatgtacct 688

                                                                       
Query: 489 ggttcaaggcctgtctgttatctcctatccattcactactctctcaaccctcctgagact 548
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 689 ggttcaaggcctgtcggttatctcctatccattcgctactctctcaaccctcctgagact 748

                                                                       
Query: 549 cggtttgttcttttgtaaaataactacataggagcttttgcaaggattgagacaccattc 608
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 cggtttgttcttttgtaaaataactacataggagcttttgcaaggattgagacaccattc 808

                                                                       
Query: 609 ataactcttgttatgttgctattaccgaaagttctcagcaaatgttagctagtgttggac 668
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ataacccttgttatgttgctattaccgaaagttctcagcaaatgttagctagtgttggac 868

              
Query: 669 ctc 671
           |||
Sbjct: 869 ctc 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |