Query= MSMg01no141_p13.b1 MSMg01no141_p13.b1 CHROMAT_FILE:
MSMg01no141_p13.b1 PHD_FILE: MSMg01no141_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:01 2005
(706 letters)
>mm_chr3_149577427_149578530
Length = 1104
Score = 1247 bits (645), Expect = 0.0
Identities = 691/709 (97%), Gaps = 8/709 (1%)
Strand = Plus / Minus
Query: 1 taaagaaataattaacttttactaagtttacactaattatctctggagagaaaaaagaat 60
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 904 taaa-aaataattaacttttactaagtttaaacaaattatctctggagagaaaaaagaat 846
Query: 61 ataaggtatatataacattaaactaagaaagaccagagacactttggcccactggaaatt 120
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 845 ataagg----tataacattaaactaagaaagaccagagacacttttgcccactggaaatt 790
Query: 121 tgacattaaaaagcattgcttttcatcatgaaaatataattgggcacacatcaaaatatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tgacattaaaaagcattgcttttcatcatgaaaatataattgggcacacatcaaaatatc 730
Query: 181 atcaaggttattagaaggcattgctaggatgatataagatgaaaaacgaattctgctaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 atcaaggttattagaaggcattgctaggatgatataagatgaaaaacgaattctgctaaa 670
Query: 241 tggaatcaacaaggtctttaaacacaattatatttaactcataataggggcaccgagctg 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 669 tggaatcaacaaggtctttaaacacaattatatttaagtcataataggggcaccgagctg 610
Query: 301 tttcatgaggccgtaattggattcccgcgtggacaaactataaggctgaaggctggttag 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tttcatgaggccataattggattcccgcgtggacaaactataaggctgaaggctggttag 550
Query: 361 agctcactaataagagaactgggttattgcctcataaaaccattc--cagttttctcatt 418
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 549 agctcactaataagagaactgggttattgcctcataaaaccattccacagttttctcatt 490
Query: 419 gtgataattctacaagtctttggaaacacactcttaagtaaatgtcactacacaagcaag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gtgataattctacaagtctttggaaacacactcttaagtaaatgtcactacacaagcaag 430
Query: 479 gacttctacagaaagagaactacgacaaagagacagtcatggagggatgtgtttctctgg 538
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 429 gacttctacagaaagagaactacgacaaagagatagtcatggagggatgtgtttctctgg 370
Query: 539 tatgaaataacactatatcagcagccacaaccaatgttttccacagaaaggcagctgttc 598
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tatgaaagaacactatatcagcagccacaaccaatgttttccacagaaaggcagctgttc 310
Query: 599 tcac-ctgtaaggatgtctttgactttttaagttgttttatttttaatgttttgttcatc 657
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tcacattgtaaggatgtctttgactttttaagttgttttatttttaatgttttgttcatc 250
Query: 658 cctgtctgtgttgaacagaagttaaaccaggatcttcatatcttgaaag 706
||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 actgtctgagttgaacagaagttaaaccaggatcttcatatcttgaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1104
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1094
Effective search space: 761424
Effective search space used: 761424
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_p13.g1 MSMg01no141_p13.g1 CHROMAT_FILE:
MSMg01no141_p13.g1 PHD_FILE: MSMg01no141_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:01 2005
(599 letters)
>mm_chr3_149444870_149445868
Length = 999
Score = 911 bits (471), Expect = 0.0
Identities = 576/629 (91%), Gaps = 40/629 (6%)
Strand = Plus / Plus
Query: 1 ctagggttattgtgtgattctatgatcatcacacacagcacacacacacacactgacaca 60
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 201 ctagggttattgtgtgattctatgataatcacacacagcacacacagacacactgacaca 260
Query: 61 cacacatgaacacacactttgggaatagcaggtggtctgtaaagctgagagttgctgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacatgaacacacactttgggaatagcaggtggtctgtaaagctgagagttgctgttt 320
Query: 121 gacctcttatgccttcttctccatagcttgtctttctaaatgtttctttagccacatata 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 gacctcttatgccttcttctccatggcttgtctttctaaatgtttctttagccacatata 380
Query: 181 ggttcagccataaaagaagttaggcaccctgctcatatatacagttcttctgtttcactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttcagccataaaagaagttaggcaccctgctcatatatacagttcttctgtttcactt 440
Query: 241 cttcactgcttctccttctcct------cctttttccttctcctgctcctcctcttcctc 294
|||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 441 cttcactgcttctccttctccttctcctcctttttccttctcct---cctcctc------ 491
Query: 295 ctcctcctgctcctcctcctcctcctgctcctccttctcctgctccttcctcctcctcct 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctcctcctgctcctcctcctcctcctgctcctccttctcctgctccttcctcctcctcct 551
Query: 355 cct---gctcctcctgctcctgctcctgctcctgctcctcctcctgctcctgctcctcct 411
||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 552 cctcctgctcctcctgctcctgctcctcctcctgctcctcctcctcctcctcctcctcct 611
Query: 412 cct---cctgctcct----cctcctcctgctcct-cctcctgctcct---cct---cctc 457
||| ||||||||| ||||||||||||||| |||||||||||| ||| ||||
Sbjct: 612 cctgctcctgctcctgctacctcctcctgctccttcctcctgctcctgctcctactcctc 671
Query: 458 ct---cctcctcctgctcctccttctcctgctccttcctcctcctcctcctcctgctcct 514
|| |||||||||||||||||| |||||||| || ||||||||| |||||||| |||||
Sbjct: 672 ctgctcctcctcctgctcctcctcctcctgctgct-cctcctcctgctcctcctcctcct 730
Query: 515 cctgctcct---gctcctgctcctcctcctcctgctcctcctcctcctgctcctcctcct 571
||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 731 cctgctcctcctgctcctgctcctcctcctgctcctcctcctcctcctgctcctcctcct 790
Query: 572 gctcct-cctcttcctcctcctcctgctc 599
|||||| |||| |||||||||||||||||
Sbjct: 791 gctccttcctcctcctcctcctcctgctc 819
Score = 161 bits (83), Expect = 2e-43
Identities = 131/155 (84%), Gaps = 18/155 (11%)
Strand = Plus / Plus
Query: 252 ctccttctcctcctttttccttctcctgctcctcctcttcctcctcctcctgc----tcc 307
||||| ||||||| |||| ||||| ||||||||| | ||||||||||||| |||
Sbjct: 744 ctcctgctcctcc----tcctgctcctcctcctcctcctgctcctcctcctgctccttcc 799
Query: 308 tcctcctcctcct---gctcct---ccttctcctgctccttcctcctcctcctcctgctc 361
||||||||||||| |||||| ||| ||||||||||| |||||||||||||||||||
Sbjct: 800 tcctcctcctcctcctgctcctgctcctgctcctgctcct-cctcctcctcctcctgctc 858
Query: 362 ctcctgctcctgctcctgctcctgctcctcctcct 396
||||||||||||||||| |||||||||||||||
Sbjct: 859 ctcctgctcctgctcct---cctgctcctcctcct 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 540
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 3
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
