BAC Information

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BAC

Clone NameMSMg01-142B14
Chromosome3 (Build37)
Map Location 151,601,462 - 151,602,244
singlet/doubletsinglet
Overlap genenone
Upstream geneEltd1, Ifi44, H28, Ptgfr
Downstream geneLOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142B14.T7 (MSMg01no142_b14.b1)MSMg01-142B14.TJ (MSMg01no142_b14.g1)
ACCAG346797AG346798
length1,2481,360
length of high quality
(start - end)		783 (91 - 873)---
definitionCHROMAT_FILE: MSMg01no142_b14.b1 PHD_FILE: MSMg01no142_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:19 2005CHROMAT_FILE: MSMg01no142_b14.g1 PHD_FILE: MSMg01no142_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATTTTNNNNNNNNTTCAATGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCCTCAAAACAATCACAGCCCTTATTTTACATTTACTCT
AATAAATTTTGAAAGTTCAAACTAGTAGAAGAATCTTTCCCACGTTTCTT
TCAGGTTCAGAATAGTCTATTTCTAGATCCTATGGGTGTGTCCTAAGAAG
TCCATGTTTATCACGGTTTACAAACATGCTGTTCTCATTTGTCCATCACA
CCTAGAAGAATGTGGTGAGAGGCACACCACATACAGCACTTCTCCATTCA
GACTTTCTATTAAAGGAATCATTAAGCTGATAAGATACCACAGTGAGTCC
ACTTACTCTAAGCCATTAGTTTCATTTCAAGGACACATTCTAGAAATTTT
CCTGAGATTGAAACCACACTCATCAAAATGAAAACCACATTTATTTGTCG
CAATTCTTTCTGCTCTAGTTCTTTCAAGAATCTTCAAAGAAAACTAAAAT
GTGGGGGTTTCCCCAGCTCTTGTGCTGATGATGTCAAAGCTTTAAGACCT
AAATCATGAGAGAAGCAGGAGGAGGGATCACAGCAGGAGGAGCACTCCCC
AACGCCTCCACTATCCCTGGAGGTCAGCTTTCTCCCCATGGTCTATGCAT
TGTATTTCTAGCCCACAATGCATTTTGCCTGCAAAAAATCACACTTAAAA
ACGTAAAAGACAGTGAGAATCATTGTCTTCGCCAACAGCCCAGTATTATA
TTTTTATAGATGAGTATTCACCAAAATTAGGGAAGCCACCCTCTCTGAAG
AATGGTGCCCTAGACTGAGATCTCCTACTCAATAACAGAAATATTGGCCC
GGGGAGCTAGATCAGTAAAGAACCTGCCACGCTAACATGAGAAATATATA
TATATTTCTTATGGTTTATATAAAATAAAAGTGTCTATATGTCAGAAACC
CCCAAATAAAAACTTTTAAGCAATGATGATTTTTTTAAACTACTTATTAA
CATCCTTTTCCCAGTGGTTGAAAAGGGGATAGGGAATCTAAATTTTTCGG
CCTAAACCCCCCCTGAAAATGGTAAGAGTTCTAAAAAAAAACATGGGTTT
TAAAAAAATTTGTTAAGTAAAGCCCTTCCTTTTAAACCCTGGGGGGGACC
TTATTCCCGAGAAGCCTTTTTTTCAAGCCCGGGAAGATTGGTTTTTAAAA
TCACCTATCTTCTTTTTCCCNTTTTTTTTTTTGTTTAGAGTAAACCTT

TTTAGCTAGGTANCGGCGGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTTTTTCTGCCCCAGAGGTGAGATGAGACCTCTGAGGNA
AATTTATTCCTTCCGGACTCCCCCCCGATTAAATTGTTGAGGAAGGGAGT
AAGGTTGGGGCCTCTTCTTTTCCATCTTCCCCTCTATGCTTTATTTCTTT
TGCCCCTTACCTCCTAACAGCCCCCCGCGCTCCTCTCTTACTCTCTCATC
TTCCCTCCCCCTCCCCCCCTCCCTTTTTTCTCCCTTCCCCTCCCCCTTCT
CTTGCCTTCCACCTATCCCCTCTCTCCCCCTTTTCCCCCCCCCCCTTTTA
CTCTCTCCCCCTTTTTCCTCCTTCTTCTCTTCCCCTCCCCCTTTTTCTTT
TTTTTTTTTTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTCTCTTCTTCTT
TCTCTTTTCTTTTCTCCCTCTTCTTTCTTCTTTCTTTTCTTTTCCTTCTC
CTTTTTCTTTTTTTTTTCTTTTTTTTTTTTTTTTCTTTCTCCTTTTTTTC
TTCTTTTTTTTTTTTTTCTTTTTTTTTCTTCTTCTTTTTTTCTTCCTCTC
TTTTTTTTTTTTTTTTTTTTTTCTTTTTTCCTTTTTTTTTTTTTTTCTTC
TTCTTTTTTTCTTTTCCTTTTTTTTCTTTTTTTTCTTTCTTTTCTTTCTT
TTTTTTCTTTTCTTTTCTTTTTTTCTTTTTTCTTTTTTTTTTTCTCTTTT
TTCCTTTTTTTTTTCCTTCTCTTTTCTTTCTTTCCTTTCCTTTCTTCTTT
CTCTTTCTTTTTCTCTTCCCCCCTCCTTTCCTCCCTCCTTCTTTCTCTTC
CTCTCTCCTCTTCCTTCCCTTTTTCTTCCTTCCTCCCCTCTCTTTTCTTT
TCTCTTCTTTCCTTTCCCCCTCCCCCTTCCCTTCTCTCTTCCTCCCTTCC
TTTCTCCTCTCTTCTCCCATCTTCTCTCTCCCCCTCTTTCTTCTTTTTTC
CCTTTTCCTTTCCTTTTTTCCTTCCTCTCTCCCCCCCCCCTCCCCTCCCT
CACCCCCCTCTTCTCTCCCTCTCCTTCCTCTCCTCTCCTCCCTTCCCTCC
CCCTCTTCCCTCTCCCCCTTTCTCTTTCTTCTCTCTCCTCTTTTTTCTTC
CCCCCCCCCCCCCCCCCCCCCTTTCTCCTCTTTCCCATTCTCTTCCTCTC
TCCTCTTTTCCCCCTTCCTTCCTTCTTCTCCCTTTCCTCTCTCTCACCCT
CTCCCCTCTCTCCTCTCCCTCTCCTCCTCTCTCTTTTCTCCACTCCTCCC
CCCTCCCTCCCTTCTTCTCCCCTCCCCCCTCCCTTCCCCTCCTCCTTCAT
TCTCCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_b14.b1 MSMg01no142_b14.b1 CHROMAT_FILE:
MSMg01no142_b14.b1 PHD_FILE: MSMg01no142_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:19 2005
         (783 letters)



>mm_chr3_151601262_151602444
          Length = 1183

 Score = 1477 bits (764), Expect = 0.0
 Identities = 779/784 (99%), Gaps = 2/784 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttactctaataaattttgaaagttcaaactagtagaagaatctttcccac-gtttct 59
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 201 catttactctaataaattttgaaagttcaaactagtagaagaatctttcc-actgtttct 259

                                                                       
Query: 60  ttcaggttcagaatagtctatttctagatcctatgggtgtgtcctaagaagtccatgttt 119
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttaggttcagaatagtctatttctagatcctatgggtgtgtcctaagaagtccatgttt 319

                                                                       
Query: 120 atcacggtttacaaacatgctgttctcatttgtccatcacacctagaagaatgtggtgag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atcacggtttacaaacatgctgttctcatttgtccatcacacctagaagaatgtggtgag 379

                                                                       
Query: 180 aggcacaccacatacagcacttctccattcagactttctattaaaggaatcattaagctg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggcacaccacatacagcacttctccattcagactttctattaaaggaatcattaagctg 439

                                                                       
Query: 240 ataagataccacagtgagtccacttactctaagccattagtttcatttcaaggacacatt 299
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 ataagataccacagtgagtccactgactctaagccattagtttcatttcaaggacacatt 499

                                                                       
Query: 300 ctagaaattttcctgagattgaaaccacactcatcaaaatgaaaaccacatttatttgtc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctagaaattttcctgagattgaaaccacactcatcaaaatgaaaaccacatttatttgtc 559

                                                                       
Query: 360 gcaattctttctgctctagttctttcaagaatcttcaaagaaaactaaaatgtgggggtt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcaattctttctgctctagttctttcaagaatcttcaaagaaaactaaaatgtgggggtt 619

                                                                       
Query: 420 tccccagctcttgtgctgatgatgtcaaagctttaagacctaaatcatgagagaagcagg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tccccagctcttgtgctgatgatgtcaaagctttaagacctaaatcatgagagaagcagg 679

                                                                       
Query: 480 aggagggatcacagcaggaggagcactccccaacgcctccactatccctggaggtcagct 539
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 680 aggagggatcacagcaggaggagcactccccaatgcctccactatccctggaggtcagct 739

                                                                       
Query: 540 ttctccccatggtctatgcattgtatttctagcccacaatgcattttgcctgcaaaaaat 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttctccccatggtctatgcattgtatttctagcccacaatgcattttgcctgcaaaaaat 799

                                                                       
Query: 600 cacacttaaaaacgtaaaagacagtgagaatcattgtcttcgccaacagcccagtattat 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cacacttaaaaacgtaaaagacagtgagaatcattgtcttcgccaacagcccagtattat 859

                                                                       
Query: 660 atttttatagatgagtattcaccaaaattagggaagccaccctctctgaagaatggtgcc 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 atttttatagatgagtattcaccaaaattagggaagccaccctctctgaagaatggtgcc 919

                                                                       
Query: 720 ctagactgagatctcctactcaataacagaaatattggcccggggagctagatcagtaaa 779
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 ctagactgagatctcctactcaataacagaaatattggcccggggagctagatcagtaaa 979

               
Query: 780 gaac 783
           ||||
Sbjct: 980 gaac 983


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 783
Length of database: 1183
Length adjustment: 10
Effective length of query: 773
Effective length of database: 1173
Effective search space:   906729
Effective search space used:   906729
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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