Query= MSMg01no142_d19.b1 MSMg01no142_d19.b1 CHROMAT_FILE:
MSMg01no142_d19.b1 PHD_FILE: MSMg01no142_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:39 2005
(724 letters)
>mm_chr3_111096255_111097377
Length = 1123
Score = 1353 bits (700), Expect = 0.0
Identities = 718/724 (99%), Gaps = 1/724 (0%)
Strand = Plus / Minus
Query: 1 tccctctccttttgttaacactcttatatcctaagctacacaacgtacagtcaagagata 60
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 853 tccctctccttttgttaacactcttatatcctaggctacacaacgtagagtcaagagata 794
Query: 61 ctctgcagaggtcctcaaaagggcaagatgataaccactcccacatgtgctgatccatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ctctgcagaggtcctcaaaagggcaagatgataaccactcccacatgtgctgatccatat 734
Query: 121 taatcttgataccttggaaataaaatatcaaagtgatagtcaagaatcaaggcatgtata 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 733 taatcttgataccttggaaataaaatatcaaagtgatggtcaagaatcaaggcatgtata 674
Query: 181 ttcttctctagttcttctcagcctttatttctcccctagaacagattcagagattagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttcttctctagttcttctcagcctttatttctcccctagaacagattcagagattagaat 614
Query: 241 tctctccccaaattggactgtagaaatcacaatgtcatctctccacagctagtgataaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tctctccccaaattggactgtagaaatcacaatgtcatctctccacagctagtgataaaa 554
Query: 301 ttggaaattattcctatagcttttccacacatttctttggaaacttgagcacaaaaaaaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttggaaattattcctatagcttttccacacatttctttggaaacttgagcacaaaaaaat 494
Query: 361 ttatttttcttgttttattatatgtcaaaagtccctcaatccactgtggaagaaattgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttatttttcttgttttattatatgtcaaaagtccctcaatccactgtggaagaaattgta 434
Query: 421 cacagcagtcaagaaaaaatccttacaaaaatggtgttgatgatatatccttcagcctgt 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cacagcagtcaag-aaaaatccttacaaaaatggtgttgatgatatatccttcagcctgt 375
Query: 481 ttatatagcatcatatcatcttattctaaaatgtactatatgtaaagtttggctattatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttatatagcatcatatcatcttattctaaaatgtactatatgtaaagtttggctattatt 315
Query: 541 ccttagataaactgatacatactatgggtggtactatttaatattttaatcatcattctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ccttagataaactgatacatactatgggtggtactatttaatattttaatcatcattctg 255
Query: 601 gagacttctatatcacatgaaagtatgctcacacagaattgataaagctatcacttaaat 660
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 254 gagacttctatatcacatgaaagtatgctcacacagaattgatgaagctatcacttaaat 195
Query: 661 aataatatttttattttttagaaataaattcttcactctaccttccaaagccataccatc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aataatatttttattttttagaaataaattcttcactctaccttccaaagccataccatc 135
Query: 721 aatt 724
||||
Sbjct: 134 aatt 131
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1123
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1113
Effective search space: 794682
Effective search space used: 794682
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no142_d19.g1 MSMg01no142_d19.g1 CHROMAT_FILE:
MSMg01no142_d19.g1 PHD_FILE: MSMg01no142_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:39 2005
(686 letters)
>mm_chr3_110956064_110957149
Length = 1086
Score = 1218 bits (630), Expect = 0.0
Identities = 672/686 (97%), Gaps = 1/686 (0%)
Strand = Plus / Plus
Query: 1 ttgtcattgatttgccatccctgcaacctttccttcatctttatccctgcacatcttgta 60
|||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct: 202 ttgtcattgatttgccattcctgcaatttttccttcatctttattcctgcacatcttgta 261
Query: 61 ggtggaataatttatctattgaaagttttttggcttgattattacccccatctctcatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggtggaataatttatctattgaaagttttttggcttgattattacccccatctctcatca 321
Query: 121 tgaaatttgcagtaaagtggatggaactaggaaatcatcctgcatgaggtaactcagacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgaaatttgcagtaaagtggatggaactaggaaatcatcctgcatgaggtaactcagacc 381
Query: 181 ctgaaaagtgtatacggtacctcatttgtaagtgaatatttaccataaagtatatggcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctgaaaagtgtatacggtacctcatttgtaagtgaatatttaccataaagtatatggcaa 441
Query: 241 ccattcaacaattcagacatgcaaagaatctcagtaacaaggagtatctaagggaagata 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 442 ccattcaacaattcagacatgcaaagaatctcagtaacaaggagtatctaagaaaagata 501
Query: 301 ctttaatttcactgggaagtgtgaaataaaatagacacagaaaataaattgaaagagtaa 360
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctttaatttcactgggaaggg-gaaataaaatagacacagaaaataaattgaaagagtaa 560
Query: 361 agtgggcgaaagagggaatggagaggggaaaggagggaccaagtgtgaggaagactgaag 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgggtgaaagagggaatggagaggggaaaggagggaccaagtgtgaggaagactgaag 620
Query: 421 gagagagaactggaattggagggtggggcgtatgtctaggatgaactataagaccaagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagagagaactggaattggagggtggggcgtatgtctaggatgaactataagaccaagga 680
Query: 481 caaggaaaacttttagaaatgtatgagggtgaccctagctaaaattccttatcataggag 540
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 caatgaaaacttttagaaatgtatgagggtgaccctagctaaaattccttataataggag 740
Query: 541 atatgaatcctgaatcagtcacatcttgtagagaagaaataattttatgttttaaaatgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atatgaatcctgaatcagtcacatcttgtagagaagaaataattttatgttttaaaatgc 800
Query: 601 agtaagtttattcacttattgtcctgaatgttttttcgatctctgcttatggtgtggttt 660
|| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 801 agaaagtttattcacttattgtcctgaatgttttttagatctctgcttacggtgtggttt 860
Query: 661 tgagttgtatatggttttgcttttta 686
||||||||||||||||||||||||||
Sbjct: 861 tgagttgtatatggttttgcttttta 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
