Query= MSMg01no142_h21.b1 MSMg01no142_h21.b1 CHROMAT_FILE:
MSMg01no142_h21.b1 PHD_FILE: MSMg01no142_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:14 2005
(593 letters)
>mm_chr3_78041992_78042984
Length = 993
Score = 996 bits (515), Expect = 0.0
Identities = 565/593 (95%), Gaps = 18/593 (3%)
Strand = Plus / Minus
Query: 1 aacatttgagatataaatgataaatggctacacacacactcacacacacacacacacaca 60
||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 606 aacatttgagatataaatgataaatgg------------------acacacacacacaca 565
Query: 61 cacacacacacacacacacacaccacataatgcagggaaggaggtcagtatcaaaaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cacacacacacacacacacacaccacataatgcagggaaggaggtcagtatcaaaaaaga 505
Query: 121 aagtgcaaatgtaaaagaaaggtgccccagggtagtagatcttccctgaaaggtgagggc 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 504 aagtgcaaatataaaagaaaggtgccccagggtagtagatcttccctgaaaggtgagtgc 445
Query: 181 aggtaaagaaaatagaaattgtgatggtagccagaaagttatggctcctggaaaaaaaaa 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggtaaagaaaatagaagttgtgatggtagccagaaagttatggctcctggaaaaaaaaa 385
Query: 241 taggaaggcaccaatttgtgtaataggaattgtgatggagatatcaattagcaattaaca 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 taggaaggcaccaatttgtgtaataggaattgtgatggagatatcaattaacaattaaca 325
Query: 301 aagcacattttttattgatttctttaaataaattcatccagtgtgatggtttgtatatac 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 aagcacattttttattgatttccagaaataaattcatccagtgtgatggtttgtatatac 265
Query: 361 ttggcccagaaaatggcactattaggaggcgtgcccttgttggagtagatgtgtcactgt 420
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttggcccagaaagtagcactattaggaggcgtgcccttgttggagtagatgtgtcactgt 205
Query: 421 gggtgtgggctttaagtccttcatcctagctgtctggaagctagtcttttctgagcagcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gggtgtgggctttaagtccttcatcctagctgtctggaagctagtcttttctgagcagcc 145
Query: 481 ttcagatgaagatgtagaactctacatcctaccatgactgtcagaatgctgccatgctcc 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 144 ttcagatgaagatgtagaactctacatcctaccatgactgccagaatgctgccatgctcc 85
Query: 541 caccttgatgataatgaactgaacctctgaatctgtaagccagccccaattaa 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 caccttgatgataatgaactgaacctctgaatctgtaagccagccccaattaa 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 15
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_h21.g1 MSMg01no142_h21.g1 CHROMAT_FILE:
MSMg01no142_h21.g1 PHD_FILE: MSMg01no142_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:14 2005
(630 letters)
>mm_chr3_77951232_77952260
Length = 1029
Score = 1143 bits (591), Expect = 0.0
Identities = 621/631 (98%), Gaps = 4/631 (0%)
Strand = Plus / Plus
Query: 1 aatactaactggaaatacctggagttctagctccctataaaatatgctggtctgacaaaa 60
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 201 aatactaactggaaatacctggagttttcgctccctataaaatatgctggtctgacaaaa 260
Query: 61 ctataagactaagtatgaaacacaaaaacaaaagtttctttcttcttttctttcttagct 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagaagactaagtatgaaacacaaaaacaaaagtttctttcttcttttctttcttagct 320
Query: 121 tttatcaaggtataagggagaagagaactaattcattttcatcctagttaataacttcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatcaaggtataagggagaagagaactaattcattttcatcctagttaataacttcaa 380
Query: 181 ataactgaacggtaattaaaaagctgaacaactctctttattaaagaccaagtatgataa 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataactgaa-ggtaattaaaaagctgaacaactctctttattaaagaccaagtatgataa 439
Query: 241 aacataaatctttaattagagtattttttatttattataaaagttcatagaaattagtta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aacataaatctttaattagagtattttttatttattataaaagttcatagaaattagtta 499
Query: 301 ctcattaatggagccctcggttttaagaaattataaaagattatattttatcatttaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctcattaatggagccctcggttttaagaaattataaaagattatattttatcatttaaca 559
Query: 361 tttttcacgaataacaaagcattaacatttttaaagtgttatcatacttatgcatttatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttttcacgaataacaaagcattaacatttttaaagtgttatcatacttatgcatttatt 619
Query: 421 aatctacttcgagcaaacatacctaaattattctaaaagtaaaacagaatttaaaaatta 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatctacttagagcaaacatacctaaattattctaaaagtaaaacagaatttaaaaatta 679
Query: 481 actatgttttaaatattcattaaaacg-ctcaagatataatggatgataaattgtcttat 539
| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 680 aatatgttttaaatattcattaaaa-gtctcaagatataatggatgataaattgtcttat 738
Query: 540 tcacacaattatctctttaattaagagacctaaaattttaaataactctttcaattatct 599
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 739 tcacacaattatctctttaattaagagacctaagattttaaataa-tctttcaattatct 797
Query: 600 gtattttctatgctatgattgggattgatta 630
|||||||||||||||||||||||||||||||
Sbjct: 798 gtattttctatgctatgattgggattgatta 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1029
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1019
Effective search space: 631780
Effective search space used: 631780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
