BAC Information

Click to search

BAC

Clone NameMSMg01-142I11
Chromosome3 (Build37)
Map Location 137,757,848 - 137,758,119
singlet/doubletsinglet
Overlap geneMttp
Upstream geneLOC100039447, Emcn, EG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528
Downstream geneRg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771, Rap1gds1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142I11.T7 (MSMg01no142_i11.b1)MSMg01-142I11.TJ (MSMg01no142_i11.g1)
ACCAG347115AG347116
length1,2651,286
length of high quality
(start - end)
277 (134 - 410)269 (138 - 406)
definitionCHROMAT_FILE: MSMg01no142_i11.b1 PHD_FILE: MSMg01no142_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:19 2005CHROMAT_FILE: MSMg01no142_i11.g1 PHD_FILE: MSMg01no142_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACTTCTTTNNTNNACACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTACAGTCGTTTCTAACCATATAGAGTTACCANACTTCA
AACAGAAAGCACAGATTTGCCTTTAACATAACGTTAAACCACAACCAAGA
CATATTCCTGCTTTGTTGTTGTAGTTGTTGTTGTTGTTGTTTGTTGTTGC
ATTATGCTTACCGATTTTTCACTCGGGTTTTAGACTCGCGATACCACAGA
CTGAATTCCATTGAACCAGAAATATCAATAGCTAGACCACCCTGGATCTC
CATATTGGCCTTTAGTCCAGATTGCAGCTGAATATCCTATAAGCAAAAAG
TACAGTATAAGCAGTTAGTTAACACATCTTTCAGAGACACACTTGGCTTC
CTGATCTATTTTTTTTTGCTGGAGGACTTTGAAAATCAATGCCCATCAAT
TCCTTTGTTTCCATGTAAGCCCCGCACCTCTCACCTACTAACTAGTGTTC
TACCATCACACTATACCCCGCAGTGAAGAAGGCTTATAAATACAGTATCC
TGATCTTGGTCACCAGCGAAGGCATTGCTGATATGCTAAATAATTCAGGT
AAAGTATTGTAGTTACAGATCATCAATTGATAATGCTGTTTTCCTGCAAT
CAGTGTCCTCTCTTTGTGAGGGGTAATTCTTTTTTAATGTGTGTCTTTTC
GTATCGTGCTTTATTTCTTCTTGTTTATTTTTTTTTATGCTATCCTCTGA
TTTTAAATTTCTGTTCTCTTTTTGTTCTTTCTCCAATCTGTTTTCTTCTA
TGTCTTTCATGTGATTCTGTATTTTCTTGATTTTTTATAACCTTTGTTTC
CATTAATTTATTTTTCTTTTTTCTCTCTTCTATTATTTCTCTTTCTGTTA
TATTTTTTTTTTTGTCTATATTTTTTTTTTCTTTTTCTTTATTTTTTTTA
TTTTTTATTTTTAATTTTTTCTATTAATTTCTTTTTTTTTTTTTATCTTC
TTATTTCTCTTCTCTTTTTTTTTTTTCTTTTTTTCTATCTTTTTTTCTCT
TTTTTCTTTTTCCTTTATTTTTTATATTTTCCTTTTCCTTTTTTTTATTT
TCTCCTCNCTTATTTTTTTTTTTTTTTTTTTTTTTTTATCCTTTTTTTTT
TATTTTTTCTTTTTTCATTTATTTTTTTTCCTTTATCTTTCTTTCTTTTT
TACTATTTTTTTATTTTTTTTTTTATATTTCTTTTTTTTATTTTTCTTCT
TTTTATTTCTTTTTT
CCTTCTTTTTNNNACCAAGCGATGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAGACCCCGCAACAGNGGNT
TGTGCTGTAGATCATGCCTTAAAGGTTTATACAGACCATCATCTTTTGTA
GCCGCCTGCGGCCACACTAACTGGGTTCCTGAGTGGGAGGCCGGAGCTGT
ATGGAAGGAAACGGCGAGAGAGATAATGGAGGCCAAGACATGTTTCTGTT
CGAGGCCCCAAAGTTTACTAAGAGTCTGTGCTTATAAAGAGGGGAGGCCC
ATCCCCCACCAATCCATTCTTGGTGCCTGTCACCAGCCTGTAGGCTCTGC
GCAATGTGGATTGTCTCAAAGGTGTCTCAGCAGGCAGCAGGATCTCTCGG
AGAAGAGTTTTTTCAGGTGACAGAACAATAGAGCCATCTAGGTTGGAAGG
CTGCAGCCCAGGTGGTCCCACCTCAGTGGCGACAAGGTCTGCACCAGCCC
ACTTCAGGCTGGGGGAGGCTACAATCTTTAAGGTGGTGGCAATCCAGAAG
CGTGACTGAATACATTTAGTATACTGAAAAGGACAAAAATCCCACAGTCT
TGATAATACAGAAACACAACATTGCAAAATACAGATTTGTCTCAAAAATC
GTGATGTAAGAATCAGTGGTGATTTTTTTTCATAGTATACCCTTGTTTCC
ATTGATCATCCCATTACCTCGCCAGTCTTCGTCCAAGTTTATCATTAGGC
TGTGTTATACAGCTGTTAATTTTCTGGTTGAATGTTGTGTTTTTCTAATT
GACCCTATCTTATTTCTTGTATTTTTTTAATGTTCCTCGTTATCTTCCTC
CACATTCTCCAGCGTCTCCCCTCTTTTTTTTATACCTCCCGACTCACTTT
TATATTTCTCCCTTTTTTTTCATTTTCACCACCTTTTTTTGCTCCTTTTC
TCTCTTCTTTTTCTTTCTTCTTTTTTATCTCTTTTTTTATTTCTTCTTTT
CTTTTCCCTCTTCTCTTTTGTTCTCTTTCTTTTCTTACTCACCTCCTTTT
CTCTTTTTTCCTTTCTTTCTTTTCTTATCTCTTCTTCTTCTTTTTTCTTT
TGCTCTCTCTCTCCTTTTCTCTCCTCTCTTCCTCTATTAACCTCTTCTTT
CATCTCTCATCTTCCCTCTTCTCTCACTTTCTCTTCCTCCTCTTACNTCT
TACTCTTGCTCCTCTATCTTACTTTTTTCTTTTTTCTATTATTCATTTCT
TTCTCTCTTTTATCCTTTTCCATCTCTTCTCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_i11.b1 MSMg01no142_i11.b1 CHROMAT_FILE:
MSMg01no142_i11.b1 PHD_FILE: MSMg01no142_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:19 2005
         (277 letters)



>mm_chr3_137757645_137758321
          Length = 677

 Score =  485 bits (251), Expect = e-142
 Identities = 268/275 (97%), Gaps = 3/275 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaaccacaaccaagacatattcctgctttgttgttgtagttgttgttgttgttgtttg 60
           |||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 204 ttaaacaacaaccaagacatattcctgctttgttgttgta---gttgttgttgttgtttg 260

                                                                       
Query: 61  ttgttgcattatgcttaccgatttttcactcgggttttagactcgcgataccacagactg 120
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ctgttgcattatgcttaccgatttttcactcgggttttagactctcgataccacagactg 320

                                                                       
Query: 121 aattccattgaaccagaaatatcaatagctagaccaccctggatctccatattggccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattccattgaaccagaaatatcaatagctagaccaccctggatctccatattggccttt 380

                                                                       
Query: 181 agtccagattgcagctgaatatcctataagcaaaaagtacagtataagcagttagttaac 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 agtccagattgcagctgaatatcctagaagcaaaaagtacagtataagcagttagttaac 440

                                              
Query: 241 acatctttcagagacacacttggcttcctgatcta 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 441 acatctttcagagacacacttggcttcctgatcta 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)