Query= MSMg01no142_j01.b1 MSMg01no142_j01.b1 CHROMAT_FILE:
MSMg01no142_j01.b1 PHD_FILE: MSMg01no142_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:24 2005
(721 letters)
>mm_chr3_42052605_42053724
Length = 1120
Score = 1114 bits (576), Expect = 0.0
Identities = 603/612 (98%), Gaps = 1/612 (0%)
Strand = Plus / Minus
Query: 1 cctgatgtgggggactctcaactataaccccagcactctggttcagagatggaaggcaga 60
|||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 611 cctgatgt-ggggactcttaactataacaccagcactctggttcagagatggaaggcaga 553
Query: 61 aatggaagtcaccagatgcttgtgtctttctagacagaggccaggtctaacctaagggtt 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aatggcagtcaccagatgcttgtgtctttctagacagaggccaggtctaacctaagggtt 493
Query: 121 acagtcactttgcagggaaacagtcgaccccagttaaaaaagtcagttcacccagccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 acagtcactttgcagggaaacagtcgaccccagttaaaaaagtcagttcacccagccagg 433
Query: 181 atacccttttctgccatctgcttcactgtgccgacctgagaaacttttgaccctttcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atacccttttctgccatctgcttcactgtgccgacctgagaaacttttgaccctttcaaa 373
Query: 241 ttctactttttcatttttggcatagaaattcgatcatttctacccaatagtttacatatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttctactttttcatttttggcatagaaattcgatcatttctacccaatagtttacatatt 313
Query: 301 ttaaagggtaattcacatgtttaaaaatgtcttgagcatcaaatatacacaattctcaac 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttaaagggtgattcacatgtttaaaaatgtcttgagcatcaaatatacacaattctcaac 253
Query: 361 ctcataaaccagtactgtatatatgatctttgataaaagcattttcttttctttttgatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctcataaaccagtactgtatatatgatctttgataaaagcattttcttttctttttgatt 193
Query: 421 ttttcaagacagggtttctctgcgtatccctggctgtcctggaactcactttgtagccca 480
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 192 ttttcaagacagggtttctctgcatagccctggctgtcctggaactcactttgtagccca 133
Query: 481 ggctggccttgaactcagaaacctgcctgcctctgcctcccaagtgctgggattaaaggc 540
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 132 ggctggccttgaactcagaaacctgcctgcctctgccccccaagtgttgggattaaaggc 73
Query: 541 gtgtgccaccactgcccggctgataaaagcatttataatactttaatctatttaaaaatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 gtgtgccaccactgcccggctgataaaagcatttataatactttaatctatttaaaaatt 13
Query: 601 atgattaacata 612
||||||||||||
Sbjct: 12 atgattaacata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1120
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1110
Effective search space: 789210
Effective search space used: 789210
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no142_j01.g1 MSMg01no142_j01.g1 CHROMAT_FILE:
MSMg01no142_j01.g1 PHD_FILE: MSMg01no142_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:24 2005
(701 letters)
>mm_chr3_41970351_41971451
Length = 1101
Score = 1278 bits (661), Expect = 0.0
Identities = 691/701 (98%), Gaps = 1/701 (0%)
Strand = Plus / Plus
Query: 1 cccacctttcactatccctaatgccctcttctatctttatcaccatgtccaaactgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 cccacctttcactatccctaatgccctcttctatctttatcaccatgtccaaactctcaa 260
Query: 61 ctcaggcatgaccccctgcttaagaggagaccacacctaccaccagacatccagccccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaggcatgaccccctgcttaagaggagaccacacctaccaccagacatccagccccaa 320
Query: 121 actcaggttgagatcccctgctcaacaacagggtacacataccagaagaccaaaagggaa 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcaggttgagatcccctgctcaacaacagggtacacataccagaagaccaaaagggaa 380
Query: 181 acaaaaaccaaggaataaaacacccacccaacaaagaaaaactcagaaactagtctctag 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaaaaccaaggaacaaaacacccacccaacaaagaaaaactcagaaactagtctctag 440
Query: 241 acccataaccccaaactcagatgcctagatgccagtgtaagaacacaatcttacaatagc 300
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 441 acccataaccccaaactcagatgcctagatgccagtgtaagaacacaat-taacaatagc 499
Query: 301 caggtcaacatggcaccaccagagcccagatttcctacaacagcaaaccctgaatatttc 360
||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 500 caggtcaacatggcaccaccagagcccagatatcctataacaacaaaccctgaatatttc 559
Query: 361 aacatagctgaagcataagaaaaaagaacttaaaaccaactttatgaagatgatagaggt 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aacacagctgaagcataagaaaaaagaacttaaaaccaactttatgaagatgatagaggt 619
Query: 421 ccttaaaagaagtgagtaaatcctttaaagaaattgaggaaaagagaaacaaacaaacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccttaaaagaagtgagtaaatcctttaaagaaattgaggaaaagagaaacaaacaaacaa 679
Query: 481 aaaaaattggaggaaatgaataagtcccttagagaaagccaagaaagctaagaaaaaaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaaaattggaggaaatgaataagtcccttagagaaagccaagaaagctaagaaaaaaca 739
Query: 541 agcaaacaaacaaagagttgatagaaacaaatacaactgttcaagacctgaaagcagaac 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agcaaacaaacaaagagttgatagaaacaaatacaactgttcaagacctgaaagcagaaa 799
Query: 601 cagaagcaataacgaaaccacaaactaagggaattctgataatgcaaaatctaggtaatc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cagaagcaataacgaaaccacaaactaagggaattctgataatgcaaaatctaggtaatc 859
Query: 661 aaacaggaactacagatgtaggtatcagcaacggagtacag 701
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aaacaggaactacagatgtaggtatcagcaacggagtacag 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
