BAC Information

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BAC

Clone NameMSMg01-142L12
Chromosome3 (Build37)
Map Location 34,316,408 - 34,316,661
singlet/doubletsinglet
Overlap geneEG665636
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727
Downstream geneEG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142L12.T7 (MSMg01no142_l12.b1)MSMg01-142L12.TJ (MSMg01no142_l12.g1)
ACCAG347258AG347259
length1,2431,158
length of high quality
(start - end)
189 (130 - 318)254 (141 - 394)
definitionCHROMAT_FILE: MSMg01no142_l12.b1 PHD_FILE: MSMg01no142_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:45 2005CHROMAT_FILE: MSMg01no142_l12.g1 PHD_FILE: MSMg01no142_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGCATTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
CTGGAGNGAAAGGCAGTAAAATCCCCCAAANANNAANGAGAGANANGGAG
AACCCTTTAAAATTTCCTAAGCCCCANNATTTTCATGGATTGGAGGAACC
ATTCCTGTTAGCTAGCTATACTGCCCATAGAAGTTTGTTTGTTTATTTAT
GAGAAAAGGTTTCACTATGCAGCCCTGGCTGGCCTGGAACTCACTATGTA
GAGCAAGCAAGCTGGCTATCATCAAAAAAGCTGAAGCTAAGAAATGATGA
GGAAGGGCATGCCTTTGGTGATTTTGCAAATTAATGCAGCTGCTGACTCT
CCAAGAAGTTAAAGAGAAGAGAAATGCAGNCAACGGGNACCTTTTTTTTT
CTGCAGCACGGGCCACCACAGCACAAAGGGNCAAAAAGCACCCACATATG
AACCCCCCCCGCANAGACACGNGGAAAGCCAAACGAACAAAAAAAGGAAG
GCCAGGCACCAGCGGACCCCGAGGAGGCCAAGCAGCCAGCCACGCAAAGA
CAGCAGACAGGAGCCACANCCGCACGCCAACCGACGAACAACGCCGACCC
CCGGAAACCGAACACAACCCGCCGGACACCACACGCAGCACCGACCCAGC
AAAAAACAAACGACCACCCACCACAACACCCACCCCCCCCACGCCCCACA
CAGCACCCCACACCACCCCCCAAACAACCCCCCCCCAACCCAACACCCCC
CACCCCACACACAACATTTTTTTTTTTCTTTCCGCTCATCACAACCCCCC
AACACCTCTCACACCCCTCTTCACACCCTCTATGCTACACAAACTACTCC
TTTTATCTTTATACCCACCCTTCACATACTCAACACAGCCTATTTACAAT
TATCTCAACACACTACCTCATCTAATCTTCCCCCTCTTTTATTAACCCCT
TTTCCCTCTCCATCCACATCATACAACTTATTCATCATACCTCCTTCTCG
CCCTACACCCAACTCCCCTCTCTCCCTTTCTTACCTTCCTGTTCTCTTAT
CTTCTTTTATCTTCCTCTCAACCTCCTCCTANCTAGAAATTCTTATCATT
TCAAGAATGTCCCTCACTTCTCTAATATCTACTCATATTCATATACTATT
TCTCAACTTTCCTATCTCTCCTAGCATCTATTTATCACCTTTATCTTCTA
CTTTCACCCTCCTAACTAATTCAATACCACTCTCCTCTTCACT
TTTTGGAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCCCTAAAACCCCCCCNNAGNCNAAAGNCAGNCNA
AGAAAACCCTTTTAAATCCCCCCANGCCCCAGGNAGANGNAGGAGGGNCT
GGCAATTCTTCCCTCTGTAAAGAGTTAAACATCATTACAGTGGTATTAGC
TGGAGAGACACTTGGGCACAAGCTCATGGTAATAGAGCATCTAAAGAGGA
TCAGGGCTTGGTGAGAGAAAAGGAGTCCTGTTTACATCTATCTACAAAGC
AATTGAGGATACAAGGGACTTAGACTTTAATTATAGACTGAAGGCAGAGC
CCTGTGTAATGAGCCTTGGTACTAAATGGATTTGGGCATTACTGTTTTTT
TTGCCACANACACCCCCCCCCAAGCTGGNGACCAAGGAAAAACCACCAAG
CTTACAACCCCGCCGCGGCAAGACGAAGCAATGGCCAATCCACAGGGCTT
TTTGATTCTTATTTCTTTATACTCTATTTGCTTAATTCATTGTTGCTGAC
TCTATTTTTCTGTTTTTCTTTTTCTTCTGTTTTTTCTTTTTTATATTTTG
ACTTTTTTCCTCTATATTAAGACTTCTTTTTCCTTTAGCTCTTGTTTTTA
TATTTTTTTCTTTTTTTTCCTTCAACCATATGTTTCTATATAATAGCATC
CTTTCGAACGAATGTGGCAGCACTGCCGACTTCATTCAGCCTGTAGAATC
TAGTCCCAAGCTGCGAATTTTTTATTTTCTCCTTCTGTCCCCTTGCTAAG
GCACTTTATCCCTTAATTTTGCCGCGGCTTTCCCCCATTGACCTGACTAT
TCCCTAATTGGTTGAAGCCCCCAAACAAAAACCACCCTAATTCCAAGCCC
ATTTGGAAAAGGCCACCGAACCACCTCCCCCACGACCGGCCAACGGCTGC
CCCATTAAAAATACAACCCCCGGCGCCCCCCCCCTTTTGTGGGCCCAATG
GGCTTCAACAAAACCCCCACCCCCCCCCCCCCCCACAAAAACCCCAACAC
CGGCCAGGACCCCCCTTCTACTAGTAACTCCCCTAATTGGGGCACCTCAC
TAACCACCACAGCTCCCCACCAGCCACCCAACACCCCCCCAAAGCTCCTA
CCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_l12.g1 MSMg01no142_l12.g1 CHROMAT_FILE:
MSMg01no142_l12.g1 PHD_FILE: MSMg01no142_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:45 2005
         (254 letters)



>mm_chr3_34316208_34316861
          Length = 654

 Score =  462 bits (239), Expect = e-135
 Identities = 250/254 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagggnctggcaattcttccctctgtaaagagttaaacatcattacagtggtattagc 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagggcctggcaattcttccctctgtaaagagttaaacatcattacagtggtattagc 260

                                                                       
Query: 61  tggagagacacttgggcacaagctcatggtaatagagcatctaaagaggatcagggcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggagagacacttgggcacaagctcatggtaatagagcatctaaagaggatcagggcttg 320

                                                                       
Query: 121 gtgagagaaaaggagtcctgtttacatctatctacaaagcaattgaggatacaagggact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgagagaaaaggagtcctgtttacatctatctacaaagcaattgaggatacaagggact 380

                                                                       
Query: 181 tagactttaattatagactgaaggcagagccctgtgtaatgagccttggtactaaatgga 240
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagacacaaattatagactgaaggcagagccctgtgtaatgagccttggtactaaatgga 440

                         
Query: 241 tttgggcattactg 254
           ||||||||||||||
Sbjct: 441 tttgggcattactg 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)