BAC Information

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BAC

Clone NameMSMg01-142O20
Chromosome3 (Build37)
Map Location 144,854,549 - 144,855,256
singlet/doubletsinglet
Overlap genenone
Upstream geneLmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream geneCol24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142O20.T7 (MSMg01no142_o20.b1)MSMg01-142O20.TJ (MSMg01no142_o20.g1)
ACCAG347409AG347410
length1,2201,221
length of high quality
(start - end)
352 (132 - 483)710 (89 - 798)
definitionCHROMAT_FILE: MSMg01no142_o20.b1 PHD_FILE: MSMg01no142_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:13 2005CHROMAT_FILE: MSMg01no142_o20.g1 PHD_FILE: MSMg01no142_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTTTTTNNNNNATCCACTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCAGCATAGCGACACACCCCTTTTATTATCTCCACATCAGC
AGAAAAATTATATGTACGTGCTTTGGTGTCAGAGTTCTGCCCCCCTGTTG
ACTCAGTTCAGATAGCCCTATTATGTCCTCACATTCCTCCTTATCTTTTT
GGTCAAGATGTTCCCAGGATTGTTTTAACTATGGGGCATACCCAGGTTTG
TTTTTCTTTTTTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAG
CAATTTCTGAGTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTC
TTTCACTATAACTCTATAGAACAACTTGAAATCAGAAATGGTGAGACCTC
CTGCAGTTCTTTATTGTTCCAGATTGCTTTAGCTATTCTAATTTTGTCTT
GTTGTTGTTGTTCGTGGTGGTGGTGGTGGTGGTGTTTTTTTTCTTTTTTT
TTTTTTCTTTTTTCCTTCTTTTTTTTTTCTTCTTTTTCTTTTTTCTTTTT
TTTTTTCTTCTTTTTTTTTTTTTTCTTTTTTTTTTTCTCTTTCTTTTTTC
TTTTTTTTTCTTTTCTTTTTTTCTTTCTTTTTCTTTTCTTTCTTCTCTCT
TTCTCTTTTTTTCTCTTTTTTTTTCTTTTTTCTTCTTTTTTTCTCTTTTT
TTTTTTTTTTTTTTTTTTTTCTTTTTCCTTTCCCTTCTTCTCTTTTTTTT
TTTTTTTTCTCTCTTTTTTTCTTTTTTTTTTTTTTTTTTTTCTTTTCTTT
CNTCTTTTTCTTTTTCTTTTTTTTTTTCTTTTTTCTTTTTTTTTTCTTTT
TTCCTTTTTTCCTTTTCTTTTTTCTCTCTTTTCTTTTTCTTTTTTTCTCC
TTCTTTTTTTTCTTTTCTTTTCTTTTTCTCTTTTTCTTCTTTTTTTTTCT
TCTTTTTTCTTCCTTTTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTCTTT
TTTCTCTCTTATCTTTTCTCTTCTTTTCTTTCCTCTTTCTCCTTCCTTTT
TTTTCCTTCTTTNTTTCTTTCCTTTTTTCTCTTCTCTTTTCTTTTCTTCT
CTCTCTTTTTTTTCTTTTTTTCTTCTTTTTTCTTTTTTTTCTTTTCTTCT
TTATTTTACATTCTTCCATTCTTTCTTTTCTTTCTCTCTTCTTNTCCTCT
TTTTATATTTCTTNTCTCTC
NGTAGCTATTNTTAAAGCATGGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTATTGAGGCCACAATTTCCTTC
ATCTATTCACAACCTCCCCCTTCTGAGGGCCTTATAGCGCCCGGTTTGGG
GAAGAAGAGAGCTTCCGTCTGATAAAAATCAGTAACTACAAGGAACTAAA
AGCTAAGTTTACAACCTGGCAATCTGAGGTTCCTCATGTCCATAATCAAC
AGGCAAAGAAATGAGACACTATCTTTGTTCACAGATTTATTGATCTTGAC
CACTAAGAGGAGTCTTAACTGTTACTTCATAATAGAGATACAGGAAGCCC
TGGACATTCCTCAGTGTTACTATGACTAAAATGAAATTAAGTCCACACCA
ATCTGATCCAAATGGTTCACTTCTGGGAAAGACCCATAGCCCCGCAGAGG
TCCTTGCCAAAGATGAAGGGAATAGAGACTAGGAATTGAAAACATGCCCC
TGCTCCCAGGCCTGCTGCAGCCACGGACCCAGCAGCAGAAGCGAGGGCTG
TCCTTGCCTGTGTCCTTCCTGATTTGGCTGTGAATGGAATGCAAATCACT
CCAACACAGATTTTTTATTTTGGTGTCAAATATAAACATATTTGTAACAA
AGTAAGGAGATACAAACATCAAGTATTTTTGTTTCATTCTGTTTTATTCT
CTTGAGCGAAAATGTTTGATCTTATGCCACAGTATTTAAATATTATTTTA
AATTTAACAGTATTTGAGTCAGGAGCTACCAAGGAGAAAAGAACACCATT
GAAGGACTTAACCTCCTCATCCACTCTGAAGTTTGAATGAAACAAATAAC
AGAAGACTAAATTAGGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTTTCCCTCCCCTCCCCATTTTCTTTCTT
CTGCCTGGATAGCTTATAATATTGGTTGGCCTAATTTCCGAATGGGACGG
GTAAACCATCTGGCCTGGGTAATAAGTCTTTTTTTCCCCAAGCGGGGAAC
TTCTTACCCTGTTTCCCCTCGTGGCTCTAAATTTTTTGAATATTACCCCT
AAAAATGGGGGGCGCTGAAAATATTTTTTTTTCTTCCCTAATACTCCTTT
TGAAATTTTTTTAATTCTTCTCATTCTCTTTATGGGCCTCTTTTTAATAA
TATATACCTCCCTTTTTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_o20.g1 MSMg01no142_o20.g1 CHROMAT_FILE:
MSMg01no142_o20.g1 PHD_FILE: MSMg01no142_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:14 2005
         (710 letters)



>mm_chr3_144854156_144855265
          Length = 1110

 Score = 1266 bits (655), Expect = 0.0
 Identities = 696/715 (97%), Gaps = 12/715 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    acaatttccttcatctattcacaacctccccc---ttctgagggccttatagcg--cccg 55
            |||||||||||||||||||||||||||    |   ||||||||||||||||| |     |
Sbjct: 1101 acaatttccttcatctattcacaacct----cttgttctgagggccttatagtgat---g 1049

                                                                        
Query: 56   gtttggggaagaagagagcttccgtctgataaaaatcagtaactacaaggaactaaaagc 115
            |||||||||||||||||||||||||||||||||||||||| ||||  ||||||| |||||
Sbjct: 1048 gtttggggaagaagagagcttccgtctgataaaaatcagtgactatgaggaactgaaagc 989

                                                                        
Query: 116  taagtttacaacctggcaatctgaggttcctcatgtccataatcaacaggcaaagaaatg 175
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  taagtttacgacctggcaatctgaggttcctcatgtccataatcaacaggcaaagaaatg 929

                                                                        
Query: 176  agacactatctttgttcacagatttattgatcttgaccactaagaggagtcttaactgtt 235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  agacactatctttgttcacagatttattgatcttgaccactaagaggagtcttaactgtt 869

                                                                        
Query: 236  acttcataatagagatacaggaagccctggacattcctcagtgttactatgactaaaatg 295
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 868  acttcataatagagatacaggaagccctggacatccctcagtgttactatgactaaaatg 809

                                                                        
Query: 296  aaattaagtccacaccaatctgatccaaatggttcacttctgggaaagacccatagcccc 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  aaattaagtccacaccaatctgatccaaatggttcacttctgggaaagacccatagcccc 749

                                                                        
Query: 356  gcagaggtccttgccaaagatgaagggaatagagactaggaattgaaaacatgcccctgc 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748  gcagaggtccttgccaaagatgaagggaatagagactaggaattgaaaacatgcccctgc 689

                                                                        
Query: 416  tcccaggcctgctgcagccacggacccagcagcagaagcgagggctgtccttgcctgtgt 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  tcccaggcctgctgcagccacggacccagcagcagaagcgagggctgtccttgcctgtgt 629

                                                                        
Query: 476  ccttcctgatttggctgtgaatggaatgcaaatcactccaacacagattttttattttgg 535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628  ccttcctgatttggctgtgaatggaatgcaaatcactccaacacagattttttattttgg 569

                                                                        
Query: 536  tgtcaaatataaacatatttgtaacaaagtaaggagatacaaacatcaagtatttttgtt 595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568  tgtcaaatataaacatatttgtaacaaagtaaggagatacaaacatcaagtatttttgtt 509

                                                                        
Query: 596  tcattctgttttattctcttgagcgaaaatgtttgatcttatgccacagtatttaaatat 655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508  tcattctgttttattctcttgagcgaaaatgtttgatcttatgccacagtatttaaatat 449

                                                                   
Query: 656  tattttaaatttaacagtatttgagtcaggagctaccaaggagaaaagaacacca 710
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448  tattttaaatttaacagtatttgagtcaggagctaccaaggagaaaagaacacca 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space:   770000
Effective search space used:   770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)