Query= MSMg01no143_j17.b1 MSMg01no143_j17.b1 CHROMAT_FILE:
MSMg01no143_j17.b1 PHD_FILE: MSMg01no143_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:12 2005
(358 letters)
>mm_chr3_24103973_24104730
Length = 758
Score = 617 bits (319), Expect = 0.0
Identities = 343/351 (97%), Gaps = 1/351 (0%)
Strand = Plus / Plus
Query: 4 ggaattccattcctttactgaacttctatcgtctgcaccacttagcttttggttgcaagt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 204 ggaattccattcctttactgaacttctatcgtctgcaccacttagcttttggttgtaagt 263
Query: 64 aactgaaaatcaaataaaatttttttcatggccacctcaatgaatttagcttcataaata 123
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 aactgaaaatcaaataaaaattttttcatggcctcctcaatgaatttagcttcataaata 323
Query: 124 actgcttctcttagtggataagactccctccaactatctctgcctcttacccttaacctc 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actgcttcgcttagtggataagactccctccaactatctctgcctcttacccttaacctc 383
Query: 184 catctgtctccatctctatctttctcccttacagagataactctactaaccgtggctcca 243
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 catctgtctccatctctatctttctcccttaccgagataactctactaaccgtggctcca 443
Query: 244 ttagccaacactacatagtctcatggtcctagtgatgaagcagagtccagagtacctgag 303
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 444 ttagccaacgctacatagtctcatggtcctagtgatgaagcagagtccagagtacatgag 503
Query: 304 tttttattgttgctgttgtttgtttgatttttgtttgtttttgttttgttt 354
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 504 tttttattgttgctgttgtttgtttgatttttgtttgtttttgttt-gttt 553
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space: 261401
Effective search space used: 261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_j17.g1 MSMg01no143_j17.g1 CHROMAT_FILE:
MSMg01no143_j17.g1 PHD_FILE: MSMg01no143_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:12 2005
(620 letters)
>mm_chr3_24220381_24221400
Length = 1020
Score = 837 bits (433), Expect = 0.0
Identities = 456/469 (97%), Gaps = 10/469 (2%)
Strand = Plus / Minus
Query: 1 tccacttcggaaagaacattggtgagcatgactatgcttgcttctgtgtaaacagtgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tccacttcggaaagaacattggtgagcatgactatgcttgcttctgtgtaaacagtgaat 405
Query: 61 catggaaaagacagtgactggcatgattaaatcgtcgaagtcaatgccctacatgatagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 catggaaaagacagtgactggcatgattaaatcgtcgaagtcaatgccctacatgatagt 345
Query: 121 tttaactccttacagcatctagcttgctactaggacaaactagtcctgagcaaatgtgac 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 344 tttaactccttacagcatctagcttgctactagcacaaactagtcctgagcaaatgtgac 285
Query: 181 tatagtgaggtctacgggtttaggtaaattggtggaatgcccccttttggtacccatgag 240
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 284 tatagtgaggtctacgggtttaggtaagttggtggaatgcccccttgtggtacccatgag 225
Query: 241 gctgtgctgcatcccctgaacaggatgcctgtaatcctagacaatgagaagaagatgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gctgtgctgcatcccctgaacaggatgcctgtaatcctagacaatgagaagaagatgcct 165
Query: 301 gagtatcaggaattcatagtcattcctagttacacagtg-----ccgccaaggaaagccc 355
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 164 gagtatcaggaattcatagtcattcctagttacacagtgtgtgt-----aaggaaagccc 110
Query: 356 gagctacatgagccctaaagaaaaagaatattaatactgtaacaaaatatggaagaggtt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 gagctacatgagccctaaagaaaaagaatattaatactgtaacaaaatatggaagaggtt 50
Query: 416 ggtggcaattacccagggcatcgattgccttgagaaatggatctttttc 464
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 ggtggcaattacccagggcatcgattgccttgagaaatggatctttttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
