BAC Information

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BAC

Clone NameMSMg01-143K06
Chromosome3 (Build37)
Map Location 28,356,526 - 28,356,706
singlet/doubletsinglet
Overlap geneTnik
Upstream geneFndc3b, E030011K20Rik, Pld1
Downstream geneSlc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143K06.T7 (MSMg01no143_k06.b1)MSMg01-143K06.TJ (MSMg01no143_k06.g1)
ACCAG347934AG347935
length701675
length of high quality
(start - end)
271 (42 - 312)181 (65 - 245)
definitionCHROMAT_FILE: MSMg01no143_k06.b1 PHD_FILE: MSMg01no143_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:15 2005CHROMAT_FILE: MSMg01no143_k06.g1 PHD_FILE: MSMg01no143_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGCGAGAATCCGCGGAATT
CTGATAGTATGTCCGTGGGGCAGGGGCTGGTGCAGAGACTGTAGAGGAAT
GCTGCCTACTAGATTGCTTTTCATGGCTTGCTCAGCCTGCTTTCTTTTAT
ACATGCCAGGACCACCAGCCTGAGTGTAGCACCAAAGGGCTTGACCTGTC
CACCTCAATCACTAATTATGAAAATACATTACAGGTCCATTGGGAAGGAG
AGGGGGCGCATTCTCTCTGTTGAATTTTCCTCTTCCCATATGACTCCATC
TTGTGTCACCTTGGCATATTTTCTCATATTTGTAAGTGTAGAAAACCCTA
TTTGAACCCCAATCTTGCTCTCAAGGATCTGTCTTCTGACTGATAATATA
TATTGTTTTTTTTGCCCCACATTTGAATAAGAAATTTACCTTCATAGATC
ATTGTGTAACGAACTTCCGAATGTACCCTTGATGCCACACTTTTCCCATC
TTTACTGCGTACATCAGTATACATAATATTACTATGACTTGTTACCCAAA
TCTCTAAAACATATGTCATTCCTCCTAAATTACAATATATTACGTCCTGT
AACCCCTCCATTTGTACCCACTTTATATTCTTTTTTTCCTCCTCCCTCAC
CGTCTTTCTTTTTTCTCTATAAATTTCAACTAAATAAAACATTACTTCTT
A
TGAATGGGGAGGCTGGCGGCGCCTGGTTTCAAATAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTGCCCTTTCCCTCACACTCCTGAGATGGCCAAGTG
TCGACTCTAACTCTGTTGTGCAATCTGGATGCTTTCATGGGAAAAGTTGG
GCCTGAGAAGGACATTTCACACAAAGCAAAGCAAACAGAAGTTTGGAAAA
ACAACCCAGGGAGAATGATAGGCTGCCCTGACAGCCTTCCCATCGTCTGG
TCTTTGTGAAGGCACCAGAAGCTGATGTCTTCCAAGCTGAAAAATCCTTC
CAGCTTCAGTTAGATTGGCTTCCTTCTGCTTCCCCCAAACATCTTATTGG
ACCATTCTCCACCAGAAGCCTGTGCGAACAACCCTAACCAGGGCAAACTC
CATAATCCCCCCCCCGGCGCCCTTCGGGAAACATTTTCTTAAATATGAAA
AACCTAAGATGGTAAAAAAGGGACATTTCCAAAAAACTTGGAAGTTCTAT
TTCCCCCAGTTTGTGCCAACCCCCACATTTTATTTACTTCCCCCGCTTTC
ATAATCTTCTCACGTGAAGGCCCGTCTTTAAAAAATATATTATTCTTTCC
TATCAATCTTATCCCATGGCTAACACCCATTCGCGTGCTAGCGGATTATT
TTATTCCCAATTCTTTAATTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_k06.g1 MSMg01no143_k06.g1 CHROMAT_FILE:
MSMg01no143_k06.g1 PHD_FILE: MSMg01no143_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:15 2005
         (181 letters)



>mm_chr3_28356326_28356907
          Length = 582

 Score =  335 bits (173), Expect = 1e-96
 Identities = 179/181 (98%), Gaps = 1/181 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgccctttccctcacactcctgagatg-gccaagtgtcgactctaactctgttgtgcaa 59
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 381 ctgccctttccctcacactcctgagatgtgccaagtgtcaactctaactctgttgtgcaa 322

                                                                       
Query: 60  tctggatgctttcatgggaaaagttgggcctgagaaggacatttcacacaaagcaaagca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggatgctttcatgggaaaagttgggcctgagaaggacatttcacacaaagcaaagca 262

                                                                       
Query: 120 aacagaagtttggaaaaacaacccagggagaatgataggctgccctgacagccttcccat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagaagtttggaaaaacaacccagggagaatgataggctgccctgacagccttcccat 202

            
Query: 180 c 180
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 582
Length adjustment: 8
Effective length of query: 173
Effective length of database: 574
Effective search space:    99302
Effective search space used:    99302
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)