BAC Information

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BAC

Clone NameMSMg01-143N23
Chromosome3 (Build37)
Map Location 127,329,055 - 127,329,386
singlet/doubletsinglet
Overlap genenone
Upstream geneCamk2d, Ank2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik
Downstream geneNeurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143N23.T7 (MSMg01no143_n23.b1)MSMg01-143N23.TJ (MSMg01no143_n23.g1)
ACCAG348101AG348102
length718726
length of high quality
(start - end)
592 (45 - 636)339 (74 - 412)
definitionCHROMAT_FILE: MSMg01no143_n23.b1 PHD_FILE: MSMg01no143_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:32 2005CHROMAT_FILE: MSMg01no143_n23.g1 PHD_FILE: MSMg01no143_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAGAATGGCTAACGTAGGTTAAACAGACTGGAGATTATTGGCAGA
GGAAATCAAATGCTTGTAAAGAACTAAGTGCTGACCTCTGGGTTTTGTTT
GTTTGGTAGCCCAGGCTGGCCCTGAACTCTAGATCCTCTTTCTTCATTTT
CCCACGATGGAGATTAAAGGCGTGTGCCATCAAAGCCATCTACAGTGGGG
AATTTTAATAAGTGTGGTGGCTATCAGGGTAAAAGTAGAATGAAATAATA
ATTAATAATTTGCTTATTGTGTAATTTACATAGGCATAAGATCTTGCTGA
TCATAATAGCCCTGTAGTGAGTATTACCGTGAACATCTTCTTGATCAGGG
GACCAGAGAGGACTCCTCTGTTTTGCTTTGGTCTTCTACCAGCAAGTCGA
CGGTGAAGCATCAGAAAGCCAAGGCTGTTAATCGTGAGGGCAATGACTAT
GAGCTGTCTACAGAACTCTTGGCAGCCATGGGAGCATTCAGCATTTGAGC
TTTCCAATATGGCAGCCACTAGCCACACAGGGGTCTTGACACCTGAAGTG
GTCGGTGTAGCTGAAGAAATGTATTTGTAGTTTTGTTGACATCTTATACA
TTTCTCTGTGCGTAAGATGCCAACAGACCATGTGATTGCCTGTGTGAATT
AATTGATCTTTGATTACC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGAATTGTTTCTGTGACTTGCGAAGTT
TTTTTTTTTTTTTTTTTTTTTTTGGAAGTGCATATAAAGAGGTAGGAGAG
CTACTTGTGCGGGGAGCGCTGCCCGGCGCGCCGCGGCCGCCCCCTCCCGG
CCGGGAGAGCCAGCTCCGCCCAGGCCTGCACCAACAGAAGCATTATCTCA
ATATTGTGACCAACTGCAGAGCCGGGCGGCAGCGTGGTTCGCTCCAGGTG
CAGACTTGGCGCCTCTCTCTTGACTTGGCACATAGAGCGTGCTGGAGTAA
CACTAAAGAGAATGAAAGAACGAACAATCAGCTTTATATGTGTGTGTGTA
TGCTTATATATACCCCCACAAAAATACATTTATATACACACAAATATATA
TAAATATACATATATGTGTATATATATTAGGGGGCTGTAAAACCCTATTT
CCGTCTCTCAGTCCTCAAATTTTATTACTAATATTTCACTCTTATATGAT
ACCAGTCACTTTACTCCTACTATCTCCCTCCAATATTTTACATCTATTTA
TGTAAATTCTTCCCTTATATTCCTGTTCCCAATTACAAATCCCCCTATTT
GTGCCCTCTTTTTTCATCGCTTTCGGTTATGGAGGTAGATATATAAAAGC
TATCACCATATTTTTATATTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_n23.g1 MSMg01no143_n23.g1 CHROMAT_FILE:
MSMg01no143_n23.g1 PHD_FILE: MSMg01no143_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:32 2005
         (339 letters)



>mm_chr3_127328848_127329586
          Length = 739

 Score =  609 bits (315), Expect = e-179
 Identities = 330/339 (97%), Gaps = 7/339 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaattgtttctgtgacttgcgaagtttttttttttttttttttttttttggaagtgcat 60
           |||||||||||||||||||| ||||||||||||||||||||||       ||||||||||
Sbjct: 208 tgaattgtttctgtgacttgtgaagtttttttttttttttttt-------ggaagtgcat 260

                                                                       
Query: 61  ataaagaggtaggagagctacttgtgcggggagcgctgcccggcgcgccgcggccgcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaagaggtaggagagctacttgtgcggggagcgctgcccggcgcgccgcggccgcccc 320

                                                                       
Query: 121 ctcccggccgggagagccagctccgcccaggcctgcaccaacagaagcattatctcaata 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcacggccgggagagccagctccgcccaggcctgcaccaacagaagcattatctcaata 380

                                                                       
Query: 181 ttgtgaccaactgcagagccgggcggcagcgtggttcgctccaggtgcagacttggcgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtgaccaactgcagagccgggcggcagcgtggttcgctccaggtgcagacttggcgcc 440

                                                                       
Query: 241 tctctcttgacttggcacatagagcgtgctggagtaacactaaagagaatgaaagaacga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctcttgacttggcacatagagcgtgctggagtaacactaaagagaatgaaagaacga 500

                                                  
Query: 301 acaatcagctttatatgtgtgtgtgtatgcttatatata 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaatcagctttatatgtgtgtgtgtatgcttatatata 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)