Query= MSMg01no143_p20.b1 MSMg01no143_p20.b1 CHROMAT_FILE:
MSMg01no143_p20.b1 PHD_FILE: MSMg01no143_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:41 2005
(367 letters)
>mm_chr3_131067393_131068159
Length = 767
Score = 687 bits (355), Expect = 0.0
Identities = 361/363 (99%)
Strand = Plus / Minus
Query: 5 gaattctctcgacctcaagggaatgccgaaggagcccccactaccagtgaggaaagtggg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 567 gaattctctcgacctaaagggaatgccgaaggagcccccactaccagtgaggaaagttgg 508
Query: 65 gggaaagggtctgggttaagcattaatccaagaatcagtgtgcagccggggagaaggtca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gggaaagggtctgggttaagcattaatccaagaatcagtgtgcagccggggagaaggtca 448
Query: 125 cactgggtaaataatcagctgtacctgggctgagctgccttttccactgccaaacacaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cactgggtaaataatcagctgtacctgggctgagctgccttttccactgccaaacacaaa 388
Query: 185 ccttccggttactaggcaacggccgtgactcgcaccctgaatacttcactacaatgaaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccttccggttactaggcaacggccgtgactcgcaccctgaatacttcactacaatgaaat 328
Query: 245 gtccagcccccacatttccaggaaatgcccttcttttaagtcactggggacctgggcgaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtccagcccccacatttccaggaaatgcccttcttttaagtcactggggacctgggcgaa 268
Query: 305 cagtcactcagggtatcaggtaccttagcctgccacttgtcagtgcctgagggatgtaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagtcactcagggtatcaggtaccttagcctgccacttgtcagtgcctgagggatgtaag 208
Query: 365 ctt 367
|||
Sbjct: 207 ctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_p20.g1 MSMg01no143_p20.g1 CHROMAT_FILE:
MSMg01no143_p20.g1 PHD_FILE: MSMg01no143_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:41 2005
(494 letters)
>mm_chr3_130947493_130948386
Length = 894
Score = 820 bits (424), Expect = 0.0
Identities = 471/494 (95%), Gaps = 15/494 (3%)
Strand = Plus / Plus
Query: 1 ccaccaggagtgacaggcgagctagaaccccatgtcagagaagacctgcacatctccagc 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ccaccaggagtgacaggcgagctagaaccccatgtcagagaagacctgcgtatctccagc 260
Query: 61 atggagcaagctgacctcagcaagacggtatgaaggtgtatgggtctcccctgtctctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggagcaagctgacctcagcaagacggtatgaaggtgtatgggtctcccctgtctctct 320
Query: 121 catcatgtcagtgacctcgtgttcctcccagtctgatgtccctgtcagcactgccattgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 catcatgtcagtgacctcgtgttcctcccagtctgatgtccctgtcagcactgtcattgg 380
Query: 181 ccctggcacaggcacataaaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaa 240
||||| |||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 381 ccctgacacaggcacataaaaaaa----acaaaacaaaacaaaacaaaa---aacaaa-- 431
Query: 241 aaaaagtagaggagccttccaagataagagctgccctttcttcctctcctgaagaggaca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 -----gtagaggagccttccaagataagagctgccctttcttcctctcctgaagaggaca 486
Query: 301 attgtgacaaccgatatacaaagggggctttttttttttttatcaaccttccaggttccg 360
|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 487 attgtgacaaccgatatacaaagggggcttttttttttgt-atcgaccttccaggttccg 545
Query: 361 gttaagtgtcacgcaacatcaggaccagatgcccactgacctccacaagcttcatcatag 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gttacgtgtcacgcaacatcaggaccagatgcccactgacctccacaagcttcatcatag 605
Query: 421 gcacggggttgaaaaagtggaggccagcaaatcggtcttgtctggtggtagcattggcta 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 606 gcacggggttgaaaaagtggaggccagcaaatcggtcttgtctggtggtggcattggcta 665
Query: 481 tgtttgtgatctgc 494
||||||||||||||
Sbjct: 666 tgtttgtgatctgc 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
