BAC Information

Click to search

BAC

Clone NameMSMg01-144A02
Chromosome3 (Build37)
Map Location 111,232,227 - 111,232,672
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043190, LOC668712
Downstream geneLOC625585, EG229746, LOC668717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144A02.T7 (MSMg01no144_a02.b1)MSMg01-144A02.TJ (MSMg01no144_a02.g1)
ACCAG348195AG348196
length710833
length of high quality
(start - end)
450 (45 - 494)172 (78 - 249)
definitionCHROMAT_FILE: MSMg01no144_a02.b1 PHD_FILE: MSMg01no144_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:43 2005CHROMAT_FILE: MSMg01no144_a02.g1 PHD_FILE: MSMg01no144_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATTAAATACCGAAATTAAAAATTTTTTGAAATTGTTAAAGACTA
TAAAAATGCTCAATAGAAAGAACAAAAATGATTTTAAAGTATCTCAAGAC
TGTTCATCATCTTTAGAAACTGCAAAATAATAGTGATAATAATAATAAAT
AATACTAAACAAAATACTGATAACATCTGGAGGAAAGGGGGAATGAAACC
CTCATTCACTGTTGGTAGGGCTGGGAACTAGTGCTGATCAGGAAAACCAG
GAGATTCCTAAACAATCTGGCAACTCTTGCTGAAGACACCATGGACTTTC
AACACATGACCCAGAGAATCAAGCTGGTTCTTACCATATATCCTTCTCCG
TGAAGACTAGCTTTCAACTCTAATTTTATACTCTAGCTTCCAAAGGAGGA
AAGCAACCAGTACTCCTAACCAGCTGTGACACACATGAATCTCAGTGATC
ATCAGGGCAAGTTTTTCTCAGAAGAGTGTATCTCAACCTGTTGTTTGGAA
CCCTTTTGGTAAACCTCTTTCTCCAAAATTTTTTACACTCTGAATTATTA
AAGCAGCACATTTTCAGTTATGAATTACCTACAAAAAATTATGGCCGGAA
TTCACCCCAATATGAGCAATTTGCACTATAGGCTGAAAACATCTCAAGTG
TTGTATACTC
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATT
TTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTA
TATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCT
TTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGCCGCCTTTTGCCT
TGCTTACACTTTGTAGTTCCTTTAGTTCCCATTTGTCCCCTCCCGTTTTC
TACCCGCCCGCCATTGCCGCCCTGTCCTTTTTCTTTTCCCCTGCATTTCT
TTCTCTCTATCTTTTCCTATCTCCTTTCCTTCTCCTATTCCTCTTTCTTC
TCTCCCTTCTTTTTTTCCTTTTTCCCCCCCCCCCGTTTTTCCCTCTTTTC
CCCATTTTTTTCTCCCCCCCCGCCCTTTTTTTCTTTCATACCCTTTTTTT
TCTCCCTCCTTCCCCCCATTTTTTTTTTCTCTCTCTTTTTTCCCCTTCCC
TTTCCTCTTGTTATCCTTGCTTTTTTTTTTCCCTTTTTTTCCTTTTTTTT
CTCTTTTTCTTCCGCTTCTTTACTTCTCCCTCTTTCCCCCCCCCTTATTT
CCGCTTTTGCCTCTCTTTTTTCCCTCTTCTTCTCTCTCACTTTTCCCTTT
TTCCTCTTTCCCCCTCTTCTCTCCTTTTTTTTCCCCACTTCTTTTCCTTA
TCCTTCTCTTTTTTCTTCCCTTCTCTCACTATCGCTCCCCCTTTTCCTCT
TCTTCCTCTTTCTTTCCCGCCCCTCTATCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_a02.b1 MSMg01no144_a02.b1 CHROMAT_FILE:
MSMg01no144_a02.b1 PHD_FILE: MSMg01no144_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:43 2005
         (450 letters)



>mm_chr3_111232023_111232872
          Length = 850

 Score =  808 bits (418), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaattaaataccgaaattaaaaattttttgaaattgttaaagactataaaaatg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaattaaatactgaaattaaaaattttttgaaattgttaaagactataaaaatg 264

                                                                       
Query: 65  ctcaatagaaagaacaaaaatgattttaaagtatctcaagactgttcatcatctttagaa 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 ctcaatagaaagaacaaaaatgattttaaagtatctcaagactattcatcatctttagaa 324

                                                                       
Query: 125 actgcaaaataatagtgataataataataaataatactaaacaaaatactgataacatct 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 actgcaaaataatagtgataataataataaataatactaaacaaaacactgataacatct 384

                                                                       
Query: 185 ggaggaaagggggaatgaaaccctcattcactgttggtagggctgggaactagtgctgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaggaaagggggaatgaaaccctcattcactgttggtagggctgggaactagtgctgat 444

                                                                       
Query: 245 caggaaaaccaggagattcctaaacaatctggcaactcttgctgaagacaccatggactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggaaaaccaggagattcctaaacaatctggcaactcttgctgaagacaccatggactt 504

                                                                       
Query: 305 tcaacacatgacccagagaatcaagctggttcttaccatatatccttctccgtgaagact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 tcaacacatgacccagagaatcaagctggttcttaccatatatccttctccatgaagact 564

                                                                       
Query: 365 agctttcaactctaattttatactctagcttccaaaggaggaaagcaaccagtactccta 424
           ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 565 agctttcaactttaattttatactctagcttccaaaggaggaaagcaatcagtaatccta 624

                                     
Query: 425 accagctgtgacacacatgaatctca 450
           ||||||||||||||||||||||||||
Sbjct: 625 accagctgtgacacacatgaatctca 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)