CCCCCACTCTATAATTGCGGCCGCTAAACGACTCCTATATTTCGAGAATA
CGCGGAATTCAGCATTCCTTGCTCATCAGCGTTAGCATCTCTGCCGGCAC
GCAGACGGCTACCCTTTGCGGTTCGTCGTGTTACTTTAATGCGACTGAAA
AATTAAAGGGCAATATTGGGCCAATGCAAATGGTTTTGAAAAGCATGTGC
ATCCGTGCAGCGCTCTCCTTTAATTAATAGTCTGGTAAACTATTTGGTGT
ACTTGAAGTCAGCGGAGAAGCACAAAAACTCCATGTTAAATATCCACTCC
ATATTTAACAGGCTGCAGTGAGGAGCACACTATAACATGCAGGCCCTTCT
CGAGTTTCACTGTCTGAGAAATTTCAAAGCTGACCCAAGTCAACCTAAAA
ATGTTTAACACCCTGGGCCTGAACACAACAAACCCTGTGATGAGTAGACA
TTTAATTACATTTTTTTTTTCTTTTTTAAAGAAAATGAGAAACTTTTTTT
TTTTTTTTGAAATAGAGGCTTTGGAACCTAATTGGCAGCTGCAGAGGTAG
TGAGTGAGAGCCAGATCATGTGGGGAACTTTTAACACACTAACAGGACTC
AAACGAAAACTTGAATAGCAGACACCTTTGTTTCCAGTCAAATGGGCTGA
TTAAGAAATGAAGCATTTTAACGAGTTCTTAAAATGGACAATTAATTATT
TACT

NNTTCTCGATGACTGNTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCCAGGGCAATGTTTTCC
AGTCAGCCTATGAAAAGAAAAATGGAGTAAGGGCTAAAAATCAAAAAACA
GCGCAGCAGAAGTCTGGGCAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTCCCTTCCCNCCTCCCCCTCCCTTTTCCCTTTCTCCCTTTTTTTTTCC
CCTTTCCCCCTTCTCTTCTCTCCTTCCCTCCTTTTTCTCTCCCTTTTTTT
TCCCCCCTCCCCCCTTCCTCTCCCCCCTTCCTTTTTTTCTTTTCCCCCCT
CCTCCTCTTCCCCCTTTCTCTTCTCCCCCCTCCCTTCTTCCTCTCTCTTT
TTCTCTTTCTTTTTTTTTCGTGGCCCGTTTCCCCCCCCCCCCTTTTTCTC
TCTCTTCCTCCTTCTTCTTCTTCTCCCTCTCTTCCTTTCTCTTTCGTCTC
TCCCGCTCTTCTTTCTCTTCTTCTCTTCTCTTTTTTTCTCTTCTTCTCTC
CTTTCCTCCCTTTTCTTCTCCCTTTTCTCTCTCCTTTTTTCCTTCCCTCT
TTCCGTTTTCTCCCTCCTCCTCTCTCTCTTCTCGTCTTTCCCTCTCTCCT
CTTCTTTTTTTCTTCCTTTCTTCTCTCCACCTTTTCCTTTCGTTCTCCCC
TTTTCTTCTCCCCCTTCCCTTTTCTCCCTCTCTTTTCCCCCCCTCTCTCC
TTCCC

Query= MSMg01no144_b03.b1 MSMg01no144_b03.b1 CHROMAT_FILE:
MSMg01no144_b03.b1 PHD_FILE: MSMg01no144_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:47 2005
         (558 letters)



>mm_chr3_144029738_144030691
          Length = 954

 Score =  961 bits (497), Expect = 0.0
 Identities = 547/575 (95%), Gaps = 21/575 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcgttagcatctctgccggcacgcagacggctaccctttgcggttcgtcgtgttacttta 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 626 gcgttagcatctctgccggcacgcagccggctaccctttgcggttcgtcgtgttacttta 567

                                                                       
Query: 61  atgcgactgaaaaattaaagggcaatattgggccaatgcaaatggttttgaaaagcatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atgcgactgaaaaattaaagggcaatattgggccaatgcaaatggttttgaaaagcatgt 507

                                                                       
Query: 121 gcatccgtgcagcgctctcctttaattaatagtctggtaaactatttggtgtacttgaag 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 506 gcatccgtgcagcgctctcgtttaattaatagtctggtaaactatttggtgcacttgaag 447

                                                                       
Query: 181 tcagcggagaagcacaaaaactccatgttaaatatccactccatatttaacaggctgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcagcggagaagcacaaaaactccatgttaaatatccactccatatttaacaggctgcag 387

                                                                       
Query: 241 tgaggagcacactataacatgcaggcccttctcgagtttcactgtctgagaaatttcaaa 300
           |||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgaggag--cactagaacatgcaggcccttctcgagtttcactgtctgagaaatttcaaa 329

                                                                       
Query: 301 gctgacccaagtcaacctaaaaatgtttaacaccctgggcctgaacacaacaaaccctgt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 328 gctgacccaagtcaacctaaaaatgtttaacaccctgggcctgaacacaagaaaccctgt 269

                                                                       
Query: 361 gatgagtagacatttaattacattttttttttcttttttaaagaaaatgagaaac----- 415
           |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||     
Sbjct: 268 gatgagcagaca-ttaattaca-tttttttttcttttttaaagaaaatgagaaacttttt 211

                                                                       
Query: 416 ------------tttttttttttttttgaaatagaggctttggaacctaattggcagctg 463
                       |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 210 tttttttttttttttttttttttttttgaaatagaggcttcggaacctaattggcagctg 151

                                                                       
Query: 464 cagaggtagtgagtgagagccagatcatgtggggaacttttaacacactaacaggactca 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 cagaggtagtgagtgagagccagatcatgtggggaacttttaacacactaacaggactca 91

                                              
Query: 524 aacgaaaacttgaatagcagacacctttgtttcca 558
           |||||||||||||||||||||||||||||||||||
Sbjct: 90  aacgaaaacttgaatagcagacacctttgtttcca 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 954
Length adjustment: 10
Effective length of query: 548
Effective length of database: 944
Effective search space:   517312
Effective search space used:   517312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)