Query= MSMg01no144_d04.b1 MSMg01no144_d04.b1 CHROMAT_FILE:
MSMg01no144_d04.b1 PHD_FILE: MSMg01no144_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:57 2005
(661 letters)
>mm_chr3_141281215_141282274
Length = 1060
Score = 1216 bits (629), Expect = 0.0
Identities = 650/657 (98%), Gaps = 3/657 (0%)
Strand = Plus / Minus
Query: 5 gaattctccatattgacccgctgtagcattcttaaccactcctgatttcctaacaaattc 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gaattctccatattgactagctgtagcattcttaaccactcctgatttcctaacaaattc 800
Query: 65 catttgtcaaagaaaaaccttgcattttaattatttgttttgacacagtgatgaagacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 catttgtcaaagaaaaaccttgcattttaattatttgttttgacacagtgatgaagacat 740
Query: 125 acctcctgtttcttgtttctgcttcgaattacatatttccaggagacaatggggcattga 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 739 acctcctgtttcttgtttctgcttcgaattgcatatttccaggagacaatggggcattga 680
Query: 185 ttttttaaccacaagtaaacaaggcatctggactttgtcttaatgagataaagtttagtc 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 -tttttaaccacaagtaaacaaggcatctggactttgtcttaatgagataaagtttagtc 621
Query: 245 tgtgctttctcagtgggatggtttttgctatttaattggtagcaaaaaaaccttcagtaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtgctttctcagtgggatggtttttgctatttaattggtagcaaaaaaaccttcagtaa 561
Query: 305 tatgtcctttgtctgccagcagtgagttctgtgtgggaacaaagttcctgtaggaagcct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatgtcctttgtctgccagcagtgagttctgtgtgggaacaaagttcctgtaggaagcct 501
Query: 365 tcagatagaaatgctgtcttagaactaattagataaaaatcacagggaaaaaaatgttat 424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 tcagatagaaatgctgtcttagaactaattagataaaaatcacaggg-aaaaaatgttat 442
Query: 425 tcatgacttgagagaaaatttgaaaatattattgtactctatgatttccttgaataacag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatgacttgagagaaaatttgaaaatattattgtactctatgatttccttgaataacag 382
Query: 485 agaaaaaagtacagacttt-ggttccacatctctactctgaggtctttcaaaatagggcc 543
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaaaagtacagactttgggttccacatctctactctgaggtctttcaaaatagggcc 322
Query: 544 agtttactttaagtgggctatttatatcacagagatttcatgatattttagatgaaacta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtttactttaagtgggctatttatatcacagagatttcatgatattttagatgaaacta 262
Query: 604 ggataacaaagataaacagaagtatgttgcctacaatgtttatgctcctaaaataaa 660
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ggataacaaagataaacagaagtatgttgcctacaatgtttatactcctaaaataaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space: 683550
Effective search space used: 683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_d04.g1 MSMg01no144_d04.g1 CHROMAT_FILE:
MSMg01no144_d04.g1 PHD_FILE: MSMg01no144_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:57 2005
(605 letters)
>mm_chr3_141134564_141135567
Length = 1004
Score = 1085 bits (561), Expect = 0.0
Identities = 594/605 (98%), Gaps = 1/605 (0%)
Strand = Plus / Plus
Query: 1 attgaaatgtttgacttgcatttgaaatgcttgctttctctcattctgagcactgttgcc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgaaatgtttgacttgcatttgaaatgcttgctttctctcattctgagcactgttgct 260
Query: 61 tccacagaaataaacaatgaaatgttgaagtatgaaaaaagaatggagtagatattaaac 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tccacagaaataaacaatgaaatgttgaagtatgaaaaa-gaatggagtagatattaaac 319
Query: 121 agatctgttcttctccacatagtgctgaaatcctgtgacatcaattaaagtgaagttata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agatctgttcttctccacatagtgctgaaatcctgtgacatcaattaaagtgaagttata 379
Query: 181 atttaggaagtgagctacagctttggaagtgcctaagatgcagatatttgtccttacatc 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 atttaggaagtgagctacagctttggaagtgcctaacatgcagatatttgtccttacatc 439
Query: 241 agtattagcaccttttattagcaaagaacagtaactcaaaagagctttgtgttgcagagt 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agtattagcaccttttattaacaaagaacagtaactcaaaagagctttgtgttgcagagt 499
Query: 301 gaagcaaaacatatgaaaactcccctgttggggagtatcctcctttaattaaacaacaca 360
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 500 gaagcaaaacatatgaaaactcccatgttggggaatatcctcctttaattaaacaacaca 559
Query: 361 ctgagtcttatgttctcgtggaagggaaaggggatacggtgaactttcctcatgtcgaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgagtcttatgttctcgtggaagggaaaggggatacggtgaactttcctcatgtcgaca 619
Query: 421 tgcttgttggagttcttatttcaaataccggggagaacataatcatactaacatatgata 480
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 620 tgcttgttggagttcttatttcaaatactagggagaacataatcatactaatatatgata 679
Query: 481 ttgattaatcaaatctagctccagagttacaagccttatttattttaaaatggtgtgagc 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttgattaatcaaatttagctccagagttacaagccttatttattttaaaatggtgtgagc 739
Query: 541 ataggagggtttaccttcattaatcactgtgtcatgtggctcccgtgactagtttcattt 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 740 ataggagggtttaccttcattaatcactgtgtcatgtggctcccgtgactcgtttcattt 799
Query: 601 ctcag 605
|||||
Sbjct: 800 ctcag 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1004
Length adjustment: 10
Effective length of query: 595
Effective length of database: 994
Effective search space: 591430
Effective search space used: 591430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
