NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGA
ATTCCACATTGTCAACGTCACTCAGGCTTCCTGCTGTGATGGATAGCAAG
CATAAGCAGATTAAGTGTGTTTTCTGGTACATGTGCAGAATTTTCCAGAA
GATCTTAGCGGGTTTTTTTTCTTCTTTCTTTTTTCAGTATAGTCAGTGAA
ATACATCCAGCCTTTCCAATTTTCCAAACATGTTTTTTTGGGGGTAGGGT
GGCATACTCCAATCCACTTAGCTGAACAAACTGTTGTAGAAGGAAATCAG
TTCTCTTCCTCACAAGTTGACCTTGGACCTACCTCAACTTATCCAGGCAT
TGAAATGGAATTTCTAACCATGGCATTCTCTGTTTTCAGGCTTTTGAAAT
CAAACCAGACCATTTCGCCCCCTGGATTGTAGATACATGACACATGAACC
AATGCATCATAAACCTCTATGCATCATAAAACTCTATGGCAAAAGAGCAG
GGCATGTTTGCTCTTTCTTGCTTGAGGGACCTTATTTATTATAATCTTAA
CATAGTACAATTATGCTTCATGAGAACATACTTCATAAGCGTTTATGTTT
GGAAATTATATTGCCCTTTATTTAAATCTCCTTCCTTTCTTCCCTCTACC
CACATACCTCCATCTTGACCTCTTCTACTTCTACTTGTTCTCTTTAAACA
TTTTTCACCCTC

NNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATCCCTGACCTCAAGCTGTA
CTACAGAGCAATTGTGATAAAAACTGCATGGTATTGATACAGTGACAGGC
AGGTTGATCAATGGAATAGAATTGAAGACCCCAAAATGAACCCACACACC
TATGGTCACTTGATCTTTGACAAAGAAGGTAAAATCATCCAGTGGAAAAA
AGAAGGCATTTTCAACAAATGGTGCTGGCTCAAGTGGCAGTTAGCATGTA
GATTAATGCGAATTGACCCATTCTTGTCTCCTTGTATAAAGTTCAAGTCC
TAGTGGATCAACAAACTCCACATAAAACCAGTGGCACTGAAACTTATAGA
GGAGGAAGTGGGGAAGAGCCTTGGAGATATGGGCACAGGGGAAAAATTCC
TGAACAGAAAATCAGTGGCTTGTGCTATAAGATCATGAATCAACAACTGG
GATCACATAAAATTGCAAAGCTTCTGCAAGGCAAAGGATATTGTCAATAA
GACAACCAATAGATTGGGAAAAGATCTTTACCAATCCTAAATCCGATAGA
GGGCTAATATTTAATATATACAAAGAACTCAATAAGTTGGACTCCAGAGA
AACAAATAACCCTATTAAAAATGGGGTGCAGAGCTAAACAAAGAATTCTA
ACTGAGGAATACCG

Query= MSMg01no144_f06.b1 MSMg01no144_f06.b1 CHROMAT_FILE:
MSMg01no144_f06.b1 PHD_FILE: MSMg01no144_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:08 2005
         (454 letters)



>mm_chr3_77343970_77344824
          Length = 855

 Score =  770 bits (398), Expect = 0.0
 Identities = 437/454 (96%), Gaps = 9/454 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacattgtcaacgtcactcaggcttcctgctgtgatggatagcaagcataagca 64
           ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattccacattgtcaatgtcactcaggcttcctgctgtgatgtatagcaagcataagca 264

                                                                       
Query: 65  gattaagtgtgttttctggtacatgtgcagaattttccagaagatcttagcgggtttt-t 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct: 265 gattaagtgtgttttctggtacatgtgcagaattttccagaagatcttagtggtttttct 324

                                                                       
Query: 124 tttcttctttcttttttcagtatagtcagtgaaatacatccagcctttccaattttccaa 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 tttcttctttcttttttcagtatagtcagtgaaatacatccaggctttccaattttccaa 384

                                                                       
Query: 184 acatgtttttttgggggtagggtggcatactccaatccacttagctgaacaaactgttgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatgtttttttgggggtagggtggcatactccaatccacttagctgaacaaactgttgt 444

                                                                       
Query: 244 agaaggaaatcagttctcttcctcacaagttgaccttggacctacctcaacttatccagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaggaaatcagttctcttcctcacaagttgaccttggacctacctcaacttatccagg 504

                                                                       
Query: 304 cattgaaatggaatttctaaccatggcattctctgttttcaggcttttgaaatcaaacca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cattgaaatggaatttctaaccatggcattctctgttttcaggcttttgaaatcaaacca 564

                                                                       
Query: 364 gaccatttcg----ccccctggattgtagatacatgacacatgaaccaatgcatcataaa 419
           |||| ||| |    |    ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 gacctttttggtttc----tggattgtagatagatgacacatgaaccaatgcatcataaa 620

                                             
Query: 420 cctctatgcatcataaaactctatggcaaaagag 453
           ||||||||||||||||||||||||||||||||||
Sbjct: 621 cctctatgcatcataaaactctatggcaaaagag 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 855
Length adjustment: 10
Effective length of query: 444
Effective length of database: 845
Effective search space:   375180
Effective search space used:   375180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)