BAC Information

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BAC

Clone NameMSMg01-144F24
Chromosome3 (Build37)
Map Location 142,667,653 - 142,818,184
singlet/doubletdoublet
Overlap geneLOC100039883
Upstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144F24.T7 (MSMg01no144_f24.b1)MSMg01-144F24.TJ (MSMg01no144_f24.g1)
ACCAG348463AG348464
length742740
length of high quality
(start - end)		590 (72 - 661)663 (71 - 733)
definitionCHROMAT_FILE: MSMg01no144_f24.b1 PHD_FILE: MSMg01no144_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:11 2005CHROMAT_FILE: MSMg01no144_f24.g1 PHD_FILE: MSMg01no144_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,817,595 - 142,818,184)(142,667,653 - 142,668,315)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATACCGCGGAAT
TCCCCAAAGGAATATGCTTGGTAGCTCTCCAATGACCCTGGCTTGATGTG
CATTTTCCAGTGTATAGACTATACCAGTGTAAGACGTTTTCTTCTATTCT
TATTGCTTGCTTAGCACATATAGACACCCTACCATGTAATTACCACTGCT
CTGGGAACTGCAGCTACAGAAAGAAACCTCATGTTGACACTTCAATCTTC
AAAAGTCCAAGAAACAAATACAATGGTAGCTTAATTGAAAGTAGCATATA
GAAAACCAGGATGCTAAATTATAACAATAATTCTGAATTCTTCCCTCAAG
ACCAACTCTCCTTTAAAAACAATATTAGAATGCTGAGAACAGTCACTGAG
TATTGCTGGGAAAGTCACCCCCATATGTGTGGAGTGGTAGCACTGGTCTG
AGACACGAAGCAGATGGGAAGGACTTTAGGGAGAGGGGATAAAGAAGAGG
GCAACCACAGGATGCTGCTCTGGTCTCTTCTCCACTTTTGTTCTTATCCA
TGCCCCTTACTCCCTCTCTGCAGGACTCTGGCATCTCATCTACATATTCT
CAGGAGTTAAGTCATAGCAAGACAAGTGTTTGTGAGTTTGACATAAACAG
GTGCTAACTAGCTAAGCTCAGATAAGCGGCTTCTCACTTTGTTCCTTTCA
AATAACCAGGAGGAAAGAACTATGCATGCCTCTGATATGGAA

ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCAAAGAATATCTAGGTGTGAATACAAATC
ACCAATCTTGTAAAACCAGTTGGACAATCAAATAAAGCAAGCTCCTGACT
TGTCTTTCTTTCCTACAATGCACAGGACACCAATACCATTGAGCTTGTTG
AGAATAAAGATGAGGGAATTGTCAGCCATTAGGCAGAGCAGGATCAAATG
GAAACAGCATCCGAGAGGCCACTTATCACCAGTTTCAATTCAGCTTTATT
TGTGACTTCATACTCACCCTGAGTGTTTCTCTACGTTTTATATTTTCCTT
CTTAGAAATGAAAATAGATATAAGGATATCAAACACTAGATATTATCATG
ATGTGAAAGCTCTTCCCGCGCTTTCCTGAGTATTGAGAAAAAAGGCGATA
GAAAACTTTAAGTCTGTGTAATCAGAGTTCTTTCTGATGAATATAAGAAA
GGCCGTAAGAAAAACCCAGCATTATTCTTGGTGAGGATTTGACCCTGCTT
CCATATTAACCTAGAGCTGTTTAGCATGAGCATGGGGACTCTGCTACTTT
AATCTTGAATTGTTTATATGCTTGGACCTTCTTTGAACCCATAGNTATTT
TCCTCTATCTTATTTTATGGAATACCAGACACATGTTCTAAAAGTAAAAT
GTGTGTGAATTGCTGCGTCCTATCCTGTTATGAATTGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_f24.b1 MSMg01no144_f24.b1 CHROMAT_FILE:
MSMg01no144_f24.b1 PHD_FILE: MSMg01no144_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:11 2005
         (590 letters)



>mm_chr3_142817395_142818384
          Length = 990

 Score = 1094 bits (566), Expect = 0.0
 Identities = 584/590 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagctctccaatgaccctggcttgatgtgcattttccagtgtatagactataccagtgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tagctctccaatgaccctggcttgatgtgcattttccagtgtatagactataccagtgta 731

                                                                       
Query: 61  agacgttttcttctattcttattgcttgcttagcacatatagacaccctaccatgtaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 agacgttttcttctattcttattgcttgcttagcacatatagacaccctaccatgtaatt 671

                                                                       
Query: 121 accactgctctgggaactgcagctacagaaagaaacctcatgttgacacttcaatcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 accactgctctgggaactgcagctacagaaagaaacctcatgttgacacttcaatcttca 611

                                                                       
Query: 181 aaagtccaagaaacaaatacaatggtagcttaattgaaagtagcatatagaaaaccagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaagtccaagaaacaaatacaatggtagcttaattgaaagtagcatatagaaaaccagga 551

                                                                       
Query: 241 tgctaaattataacaataattctgaattcttccctcaagaccaactctcctttaaaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tgctaaattataacaataattctgaattcttccctcaagaccaactctcctttaaaaaca 491

                                                                       
Query: 301 atattagaatgctgagaacagtcactgagtattgctgggaaagtcacccccatatgtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||
Sbjct: 490 atattagaatgctgagaacagtcactgagtattgctgggaaagtcagtcttatatgtgtg 431

                                                                       
Query: 361 gagtggtagcactggtctgagacacgaagcagatgggaaggactttagggagaggggata 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 430 gagtggtagcactggtctgagacatgaagcagatgggaaggactttagggagaggggata 371

                                                                       
Query: 421 aagaagagggcaaccacaggatgctgctctggtctcttctccacttttgttcttatccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aagaagagggcaaccacaggatgctgctctggtctcttctccacttttgttcttatccat 311

                                                                       
Query: 481 gccccttactccctctctgcaggactctggcatctcatctacatattctcaggagttaag 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 310 gccccttactccctctctgcaggactctggcatctcatctacattttctcaggagttaag 251

                                                             
Query: 541 tcatagcaagacaagtgtttgtgagtttgacataaacaggtgctaactag 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcatagcaagacaagtgtttgtgagtttgacataaacaggtgctaactag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no144_f24.g1 MSMg01no144_f24.g1 CHROMAT_FILE:
MSMg01no144_f24.g1 PHD_FILE: MSMg01no144_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:11 2005
         (663 letters)



>mm_chr3_142667453_142668515
          Length = 1063

 Score = 1261 bits (652), Expect = 0.0
 Identities = 660/663 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaagaatatctaggtgtgaatacaaatcaccaatcttgtaaaaccagttggacaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaaagaatatctaggtgtgaatacaaatcaccaatcttgtaaaaccagttggacaatca 260

                                                                       
Query: 61  aataaagcaagctcctgacttgtctttctttcctacaatgcacaggacaccaataccatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaagcaagctcctgacttgtctttctttcctacaatgcacaggacaccaataccatt 320

                                                                       
Query: 121 gagcttgttgagaataaagatgagggaattgtcagccattaggcagagcaggatcaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcttgttgagaataaagatgagggaattgtcagccattaggcagagcaggatcaaatg 380

                                                                       
Query: 181 gaaacagcatccgagaggccacttatcaccagtttcaattcagctttatttgtgacttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaacagcatccgagaggccacttatcaccagtttcaattcagctttatttgtgacttca 440

                                                                       
Query: 241 tactcaccctgagtgtttctctacgttttatattttccttcttagaaatgaaaatagata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactcaccctgagtgtttctctacgttttatattttccttcttagaaatgaaaatagata 500

                                                                       
Query: 301 taaggatatcaaacactagatattatcatgatgtgaaagctcttcccgcgctttcctgag 360
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 501 taaggatatcaaacactagatattatcatgatgtgaaagctcttcccgtgttttcctgag 560

                                                                       
Query: 361 tattgagaaaaaaggcgatagaaaactttaagtctgtgtaatcagagttctttctgatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattgagaaaaaaggcgatagaaaactttaagtctgtgtaatcagagttctttctgatga 620

                                                                       
Query: 421 atataagaaaggccgtaagaaaaacccagcattattcttggtgaggatttgaccctgctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atataagaaaggccgtaagaaaaacccagcattattcttggtgaggatttgaccctgctt 680

                                                                       
Query: 481 ccatattaacctagagctgtttagcatgagcatggggactctgctactttaatcttgaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccatattaacctagagctgtttagcatgagcatggggactctgctactttaatcttgaat 740

                                                                       
Query: 541 tgtttatatgcttggaccttctttgaacccatagntattttcctctatcttattttatgg 600
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 tgtttatatgcttggaccttctttgaacccatagttattttcctctatcttattttatgg 800

                                                                       
Query: 601 aataccagacacatgttctaaaagtaaaatgtgtgtgaattgctgcgtcctatcctgtta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aataccagacacatgttctaaaagtaaaatgtgtgtgaattgctgcgtcctatcctgtta 860

              
Query: 661 tga 663
           |||
Sbjct: 861 tga 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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