BAC Information

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BAC

Clone NameMSMg01-144G08
Chromosome3 (Build37)
Map Location 107,912,468 - 107,912,579
singlet/doubletsinglet
Overlap geneGnai3
Upstream geneKcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2
Downstream geneGpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144G08.T7 (MSMg01no144_g08.b1)MSMg01-144G08.TJ (MSMg01no144_g08.g1)
ACCAG348477AG348478
length712763
length of high quality
(start - end)
64 (227 - 290)114 (134 - 247)
definitionCHROMAT_FILE: MSMg01no144_g08.b1 PHD_FILE: MSMg01no144_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:13 2005CHROMAT_FILE: MSMg01no144_g08.g1 PHD_FILE: MSMg01no144_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAGAGCGCGGAATTCTGAG
TATTGCATGTATTATATAGGAACCAAATGCCCAGTCACGGCTGCCACAAC
AATACCAAAGATTCCTAGGTATTGATATAAAGTGTTTATTAATAATAATT
GGGTCTGTGTTGGCTAAATTGGTAAGCTTGAAGAATCATAGCACTAAGTT
CAGATACTAAACAGGACAAGTGTACATAATAACACAAGCCTTTAACTCCT
CCGGCAAACTTCTGTCTGCCCCACACAGTGAGGACTCACTAAGTCAGGAC
TGTATACCATGCTCTTCTGCTTGCCTGCGTCCATTGCCTGGTTCTCCTAA
TTCTACACACGCTTCCTCTCCTTCTCTATCTGCTCATCTGCATCACATAC
AGCACACCACCCACTCTCAGTTTCCTGCCCCAGCCAAGCCAATAGGGATG
GCTTCTGTTCCTAACCCTGCAGCCAGCCTTAACCACACAGGCCATCCTTA
TACGCAGTGGGATACAGGATGTCATTGCTCTGGGTGATCTTGTGTGACCC
ATCCCCTAATTATCACAGCTGGACAGACAATCATGGATGGTCACATGTTA
TACGGCGCCTCATCATTCCTTCCCTGGCCGATATTATACACTGTGCCTGT
TATTCACCGTGTTTGCCATGTTAAGCTTTTACTGTTTATCGTGTGTCCTG
ACTTGTTTCTCN
CATTGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTTGTAGTCAGTTGTGTGGTGTTGC
TTTCCGTAAGTAAATGTTGATGGCCTAACTTAGCTGGGTGCAGGCAGCTG
TTACACTTGACAATGTTGGTCGTCTGCCTCAGGTTCCAATACATACGAAT
AGGCAGCTGCTTACATTCAGTGCCAGTTTGAAGATCTGAACCGAATAAAA
GATATCAAGGAGGTCTACACTCACTTCACCTGTGCCACAGACACCATATA
CGCGCAGTTTGTTTTTGATGCTGTTACGGATGTCATCATTACTAAACAAC
TTAACGGAATGTGGGCCTTATTGAGAGGATGGCATATTAAAAGGCATAAC
TTGAGACAGTTTACCCCCCCCCGCTGCCGAGGCCGTTTTTGCACTTGTTT
CTCTGCACAACAATGTCTTCTCTTCTTTAGCTATTACCGGGAGCATTGTT
GATACCACATGTCCTCCACTGTCCCTTGGTCCTGCATTACGTTCCGATTT
GCCTCTTTCACTGTCTCCCCACACGTCACAACCTCTACCTCGCGCTTTTC
CATTATTCCCCCCTCTACCACCTCACACGCCCTTTCCGTTATCGATTACG
CCTCTTCTATCCTTTCTTTGCCCCTTGTTCCTACCCGTTCTTTTTACGTC
CCGTCATTCTCTTCCCTCCCCCTTACTTTTGTATTTTCTGTTATTCCCAC
CACTCTATCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_g08.g1 MSMg01no144_g08.g1 CHROMAT_FILE:
MSMg01no144_g08.g1 PHD_FILE: MSMg01no144_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:13 2005
         (114 letters)



>mm_chr3_107912268_107912781
          Length = 514

 Score =  209 bits (108), Expect = 5e-59
 Identities = 111/112 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggtgcaggcagctgttacacttgacaatgttggtcgtctgcctcaggttccaataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctgggtgcaggcagctgttacacttgacaatgttggtcgtctgcctcaggttccaataca 253

                                                               
Query: 61  tacgaataggcagctgcttacattcagtgccagtttgaagatctgaaccgaa 112
           |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tacgaagaggcagctgcttacattcagtgccagtttgaagatctgaaccgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)