Query= MSMg01no144_h15.b1 MSMg01no144_h15.b1 CHROMAT_FILE:
MSMg01no144_h15.b1 PHD_FILE: MSMg01no144_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:19 2005
(584 letters)
>mm_chr3_84053800_84054783
Length = 984
Score = 959 bits (496), Expect = 0.0
Identities = 551/582 (94%), Gaps = 22/582 (3%)
Strand = Plus / Plus
Query: 3 gaattcactcattattgccactaaaggcagaagtcaggacctcctgcatactgagcaagt 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcactcattactgtcactaaaggcagaagtcaggacctcctgcatactgagcaagt 262
Query: 63 gctctaccataagctaccgtcctggctcctagtgtctcttcatcatgtatcattcaatca 122
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 263 gctctaccataagctaccgtcctggctcctagtgtctcttcatcacgtatcattcaatca 322
Query: 123 ggaactatggagcatcatgtctagagagaaggatgtcctaggtgggagtactccttttgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggaactatggagcatcatgtctagagagaaggatgtcctaggtgggagtactccttttgg 382
Query: 183 cgcttaaattcctggagcgttccttagggataacaatgtatctatttgtgttttattctt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cgcttaaattcctggagcgttccttagggataacaatgtatctatttgtgttttattctt 442
Query: 243 tgcttgaggtgttggatctggcacacactggtatgtaagcactcttccactgaaccccac 302
|||||||||| || || ||||| ||||||||||||||||||
Sbjct: 443 tgcttgaggt----ga----gc--------------aagcattcttccactgaaccccac 480
Query: 303 cctcagccctgaagggaattgttaaaggtaaagccttcctcaactctgagagtaaatcat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cctcagccctgaagggaattgttaaaggtaaagccttcctcaactctgagagtaaatcat 540
Query: 363 tgctaccacccccgcgccaagggagcccagctagttaaccgcgcactgaaggaattatgg 422
|||||| | | ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 541 tgctacgatctccgtgccaagggagcccagctagttaaccgcacactgaaggaattatgg 600
Query: 423 gcttgagctgtgggagcaggttcttctagattcacgccactggagccaataaatttcatg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcttgagctgtgggagcaggttcttctagattcacgccactggagccaataaatttcatg 660
Query: 483 actaatagacagtggtgggaagaagagtaaagaaaatggccaagcacatcccggtgggtc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 actaatagacagtggtgggaagaagagtaaagaaaatggccaagcacatcccggtgggtc 720
Query: 543 aacagggcgaccatcataaataagaaagagacagtagactgt 584
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aacagggcgaccatcataaataagaaagagacagtagactgt 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_h15.g1 MSMg01no144_h15.g1 CHROMAT_FILE:
MSMg01no144_h15.g1 PHD_FILE: MSMg01no144_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:19 2005
(214 letters)
>mm_chr3_84226049_84226662
Length = 614
Score = 414 bits (214), Expect = e-120
Identities = 214/214 (100%)
Strand = Plus / Minus
Query: 1 acacatatctgagctgtcaggccagcccccttacaatccctccgtgcattggcaacctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 acacatatctgagctgtcaggccagcccccttacaatccctccgtgcattggcaacctga 355
Query: 61 ctttcagttcctgactgtacatagctaagtcagtagaccaccaggaaggggctggccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctttcagttcctgactgtacatagctaagtcagtagaccaccaggaaggggctggccagc 295
Query: 121 atgggaaatagcagctgtgctcctgaaatacatacacagttccctgtagggtaggaaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atgggaaatagcagctgtgctcctgaaatacatacacagttccctgtagggtaggaaatg 235
Query: 181 tcgattcctaattcctacttcaggataaatttgg 214
||||||||||||||||||||||||||||||||||
Sbjct: 234 tcgattcctaattcctacttcaggataaatttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space: 124025
Effective search space used: 124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
