NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGGGCTTACAATGGCAGGCATATGGACTCTGGCTCAGCAGCCTA
GACTAAGTAACACCAGGAATGTCATCATCACTGTGGCTGGCACCCCTTGT
GGATAAATGTGGGTTGTGGTTTACTTGATGAAGAAAGGCTCTCAGCAGCT
CCACAGTAGTGGAGAGTGAATATGCAAATATTCTAAACTGTGCTGATACA
AACCTGCAATCCAATCTCTCATGAAGGCAAAGCAGGACTGTGAGTTGGAG
GCCAGCCTGAGCAAAGTGTTCAACTTCCAGGGTTTGCTATATAGGATTTG
TGGTGATGCTCATGAAGAGAATCACAGGATGTTGCTGCCACCGACCCCCA
TCTCCATCTCTCTTCTCTCTGCCTAGTTACTAGGTGACTGATATTGTTCT
GCCATGTGCTCGATAGGCTCAGAAGCAAGGAGCCATGCATGATAAAGGGA
ATCCAAAACTGGGAACCAAAGTATATCTCTTCTTCTTACAGATTGATAAT
CCTGGGTGTTTGCTACGGCAACAGAAGGCGAAACAATGTAACACTGATGT
TTAAAATGCCTTGTGAGCCCACAATGTGATGCTATTCATATGTATACTTT
TGATTTCTTCCTAAAAATAACTTCCCTTCCATGGAAATGTAGCAGGGTGT
AGCTTTTGCTATAT

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGNATATACCCTAAGTTTTG
ATTGGATAATTTGGGTTTTTGGTGGTTAGCTTCTTGAGTTCTTTATAAAT
TTTGGATATTAGTCCTGTATCAAATGTGGGATTAGTAAAGATTTTTTTCC
CCAATCTGTATGTAGGTTCTCAAACTGACCATAATGACATCAAAATCAAC
CTAAATATAAAACTATGACCTCTACTGAGAAACACGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTTTTTTTTCTCCTTCTCTTTTCACCTATACTCCT
AATTTTTTTATTTTTCCCCCCCTCCCCTTCGTCTTCCCCTTTCTTCCCTC
CTTCCTTTTCCTCCCCCCCCCCCTCATTCTCTTCTCCTTATTCATTCTAT
TTACTTCTTTTCTTTTTTGATCCTACCTGTTTTCTTCNCTTTCTTTCCTT
TTTGCATCTATTTTCATTTTCATTTTCACATTTTTTTTCTCTTTCTCCTC
TAACTCTTATTCTTTTATATCACTTATACAATTTTCATTTTATCTATTTT
TCTTCCTTTCTCATTTTCCACCTTTTCACCTATCTTCTTTTTTACGTCTT
TATCTCTCCCCTTCATTATTTTCGTACTATCTTTCTTCTCTTTCCCTCTT
GCTTCTTTTTCTCTTTTATTCACTATCTTTTTTCTTTTT

Query= MSMg01no145_a15.b1 MSMg01no145_a15.b1 CHROMAT_FILE:
MSMg01no145_a15.b1 PHD_FILE: MSMg01no145_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:01 2005
         (666 letters)



>mm_chr3_80580443_80581508
          Length = 1066

 Score = 1226 bits (634), Expect = 0.0
 Identities = 655/662 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagggcttacaatggcaggcatatggactctggctcagcagcctagactaagta 64
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagggcttagaatggcaggcacatggactctggctcagcagcctagactaagta 264

                                                                       
Query: 65  acaccaggaatgtcatcatcactgtggctggcaccccttgtggataaatgtgggttgtgg 124
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 acaccaggaatgtcatcatcgctgtggctggcaccccttgtggataaatgtgggttatgg 324

                                                                       
Query: 125 tttacttgatgaagaaaggctctcagcagctccacagtagtggagagtgaatatgcaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttacttgatgaagaaaggctctcagcagctccacagtagtggagagtgaatatgcaaat 384

                                                                       
Query: 185 attctaaactgtgctgatacaaacctgcaatccaatctctcatgaaggcaaagcaggact 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attctaaactgtgctgatacgaacctgcaatccaatctctcatgaaggcaaagcaggact 444

                                                                       
Query: 245 gtgagttggaggccagcctgagcaaagtgttcaacttccagggtttgctatataggattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgagttggaggccagcctgagcaaagtgttcaacttccagggtttgctatataggattt 504

                                                                       
Query: 305 gtggtgatgctcatgaagagaatcacaggatgttgctgccaccgacccccatctccatct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtggtgatgctcatgaagagaatcacaggatgttgctgccaccgacccccatctccatct 564

                                                                       
Query: 365 ctcttctctctgcctagttactaggtgactgatattgttctgccatgtgctcgataggct 424
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcttctctctgtctagttactaggtgactgatattgttctgccatgtgctcgataggct 624

                                                                       
Query: 425 cagaagcaaggagccatgcatgataaagggaatccaaaactgggaaccaaagtatatctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagaagcaaggagccatgcatgataaagggaatccaaaactgggaaccaaagtatatctc 684

                                                                       
Query: 485 ttcttcttacagattgataatcctgggtgtttgctacggcaacagaaggcgaaacaatgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcttcttacagattgataatcctgggtgtttgctacggcaacagaaggcgaaacaatgt 744

                                                                       
Query: 545 aacactgatgtttaaaatgccttgtgagcccacaatgtgatgctattcatatgtatactt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aacactgatgtttaaaatgccttgtgagcccacaatgtgatgctattcatatgtatactt 804

                                                                       
Query: 605 ttgatttcttcctaaaaataacttcccttccatggaaatgtagcagggtgtagcttttgc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttgatttcttcctaaaaataacttcccttccatggaaatgtagcagggtgtagcttttgc 864

             
Query: 665 ta 666
           ||
Sbjct: 865 ta 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)