Query= MSMg01no145_b07.b1 MSMg01no145_b07.b1 CHROMAT_FILE:
MSMg01no145_b07.b1 PHD_FILE: MSMg01no145_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:04 2005
(584 letters)
>mm_chr3_141787303_141788287
Length = 985
Score = 1058 bits (547), Expect = 0.0
Identities = 571/579 (98%), Gaps = 1/579 (0%)
Strand = Plus / Plus
Query: 7 gaattccatatttctgagaagtcaggctatagcaacacatgctatttggttgaagttagt 66
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaatcccatatttctgagaagtcaggctatagcaacacatgctatttggttgaagttagt 266
Query: 67 gctaaaaccaaaatgagtttttcattcatgagtctctgaaaatccagtagatttgcaatc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gctaaaaccaaaatgagtttttcattcatgagtctctgaaaatccagtagatttgcaatc 326
Query: 127 tgtgtgatctggctaacgcctatacagaagaattgaaaacaggtctacatagctgagatt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgtgtgatctggctaacgcctatacagaagaattgaaaacaggtctacatagctgagatt 386
Query: 187 gttattttataacctgagtacaatttccccttaagaacaagtgacctttaagagttatca 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gttattttataacctgagtacaatttccccttaagaacaagtgacctttaagagttatca 446
Query: 247 tctcattaagtctaaggagcctctgttataaattgttaccatatttctatgagagagtgt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctcattaagtctaaggagcctctgttataaattgttaccatatttctatgagagagtgt 506
Query: 307 gtctaatcataagtcactgagtagtagttacaaacactttctcatggaacacactgcatg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 507 gtctaatcataagtcactgagtagtagttacaaacactttctcatggaacacactgcgtg 566
Query: 367 gtcctgagagcaaacaataaaggaagctcgccttcccacttgccgatcttggaaccatga 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtcctgagagcaaacaataaaggaagctcgccttcccacttgccgatcttggaaccatga 626
Query: 427 atatgtgggctccaatgagagacaaacaagcaggtcctctatcattgaagctctccattc 486
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 acatgtgggctccaatgagagacaaacaagcaggtcctctatcattgaagctctccattc 686
Query: 487 tggaaatttggaactgggtaaggttttccagtgaaacaatggggggtttgtggatgactt 546
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct: 687 tggaaatttggaactgggtaaggttttccaatgaaacaatgggggttttgtggatggctt 746
Query: 547 gttctgacttttaaa-tatatttaatagcaactgattgg 584
|||||||||||||| |||||||||||||||||||||||
Sbjct: 747 attctgacttttaaaatatatttaatagcaactgattgg 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 985
Length adjustment: 10
Effective length of query: 574
Effective length of database: 975
Effective search space: 559650
Effective search space used: 559650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_b07.g1 MSMg01no145_b07.g1 CHROMAT_FILE:
MSMg01no145_b07.g1 PHD_FILE: MSMg01no145_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:04 2005
(604 letters)
>mm_chr3_141832147_141833149
Length = 1003
Score = 1152 bits (596), Expect = 0.0
Identities = 602/604 (99%), Gaps = 1/604 (0%)
Strand = Plus / Minus
Query: 1 atgagataccgccctgggaaacagttggcaaaatggctgagttgaaagaggttagctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atgagataccgccctgggaaacagttggcaaaatggctgagttgaaagaggttagctatg 744
Query: 61 ctccccaaatctccggagaagccgaatcaccttactttatattcatttctccaagagtcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctccccaaatctccggagaagccgaatcaccttactttatattcatttctccaagagtcg 684
Query: 121 aaaacacttacagacttagccaggagaccacagagtaaagatgtcaaatgctttctcaag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 -aaacacttacagacttagccaggagaccacagagtaaagatgtcaaatgctttctcaag 625
Query: 181 ccaaactgtaaaatttcatcgaacacaagtggaattttttgcgttgcctttcattgttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccaaactgtaaaatttcatcgaacacaagtggaattttttgcgttgcctttcattgttta 565
Query: 241 caatttcaaaatatctgtattaaggaaaaatttcattttcctaggaagcctcactccatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caatttcaaaatatctgtattaaggaaaaatttcattttcctaggaagcctcactccatg 505
Query: 301 cctcaagatttctaacccctcacccgagactgtggatctaatttgatgtgcactcccctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cctcaagatttctaacccctcacccgagactgtggatctaatttgatgtgcactcccctc 445
Query: 361 cccttttttatgaggtgtgtgaccaacgtttccataacttctccaaagtgtcgctggccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccttttttatgaggtgtgtgaccaacgtttccataacttctccaaagtgtcgctggccc 385
Query: 421 cggagaagttgaagttcaccgcgctctgccatttggagtcggtcccagctcgcaccattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cggagaagttgaagttcaccgcgctctgccatttggagtcggtcccagctcgcaccattc 325
Query: 481 cgcgctgcctcctcgcgcttttgtttctggaagctgaagggggcgtgtggcaaggctttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgcgctgcctcctcgcgcttttgtttctggaagctgaagggggcgtgtggcaaggctttt 265
Query: 541 ggactagccagggacgtttgtccggctgcagcgccagggatgctctgaggacggctctgg 600
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaccagccagggacgtttgtccggctgcagcgccagggatgctctgaggacggctctgg 205
Query: 601 aggt 604
||||
Sbjct: 204 aggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1003
Length adjustment: 10
Effective length of query: 594
Effective length of database: 993
Effective search space: 589842
Effective search space used: 589842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
