BAC Information

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BAC

Clone NameMSMg01-145E12
Chromosome3 (Build37)
Map Location 60,700,382 - 60,700,633
singlet/doubletsinglet
Overlap genenone
Upstream geneC130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853
Downstream geneP2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145E12.T7 (MSMg01no145_e12.b1)MSMg01-145E12.TJ (MSMg01no145_e12.g1)
ACCAG349124AG349125
length692691
length of high quality
(start - end)
252 (102 - 353)54 (622 - 675)
definitionCHROMAT_FILE: MSMg01no145_e12.b1 PHD_FILE: MSMg01no145_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:19 2005CHROMAT_FILE: MSMg01no145_e12.g1 PHD_FILE: MSMg01no145_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGGGAATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAT
CCGCGGAATTCACTCTTGTCCAATTCACTTTGGAAATGGTTCATAGGCAA
CACTAATTCACTATGGAAAAATCCAAGTTTACTGAAATGCAATGGCTTAT
TCTATTAGGCCACTGAAATGACTAACTTTAATACTCAGCTTGCTATAATG
CAGAATCACCAAGGTGAAAATCTCAATGAAGGATTGTATCCATTGGGTTG
ACCTATGGACATGTCTCAGGACAATGGTGTATTATCTTCATTAAGTTAGT
TGATGTTGAAAGATGAAGTTCATAGTGAATGGCACCACAGACATGCATTT
CCAAATAGGATCAGAGTAGAGAATGATGTATAGCAGAAACAAGCAAGCAA
TGAAGCATGCTTGCAACATTTCTGCCTGTCCTGGCTATGGATGGATGTGA
TCAGCTTTTAATCTCCTGACTCTGTGACTTTACCACAGGGACATATATTA
GGATATTTTATCATATCATAAATGAACCTAGAACAGGCACTGCTTCCGTT
CATGAAACTATGCCCTCATGTTTCTACCACCACTTAAGAGACCTCACCTC
CTACTTTCATCTCTTTAGGGGTTCGGTTGATGACTCAATGAAACAGCATG
CAGATTCCTTCTATAAGATTTAGTTGAGATTTACCATAAAGA
NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCATTGGTAGGAGCCAGAC
TTTTGCTTTCCAAAGGTGAAGGAACATAAGTCTGTCTACTAAGCCCTTCA
TCTTCGTCAAGGACTCTTCTACTTATTACAGTCATAGGGGGTTGGATGAT
TAGCCTCTATTCCATCATTAGTTTCTTCATATTTGTGGCCTAAGAAAGGG
GAATTAGGAATCTTGTTTGGTTAATCTTGGCCGATTACAGTTTTTTAAAA
GACTCGGCAACAGGCAAGCCACATAATTAGGTATCGATTTTTCTTGACCC
CAACTAGCAGTAAGTGTATGCGGGGCCAAAGTTCTTCCTGAAGATAACAG
TATTCTTCCTCTAATTTCTCTGTGGTCAAATATCTCTTAGAACTAAGAAG
AATAAAGAGATGCTGGAGCAAACTTCGAAATGGTAAGAGAGATATGCGCT
TTGCCAGTGAAAATGTTACGTCCAACAAATAGCTTCTTGTTTAACTGCTG
GGTCAGGAAATCTGTCTTAGTCATATTGATTACATCATCTAGTACACAGC
GTGTTTTCCTAACAACAGAGATGAGTGAATGCTTCAAGTGAATAAATGAA
TATTGCCATACCGAAAAACAGGACTTAAGAAGAACAATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_e12.b1 MSMg01no145_e12.b1 CHROMAT_FILE:
MSMg01no145_e12.b1 PHD_FILE: MSMg01no145_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:19 2005
         (252 letters)



>mm_chr3_60700182_60700833
          Length = 652

 Score =  487 bits (252), Expect = e-142
 Identities = 252/252 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaattcactatggaaaaatccaagtttactgaaatgcaatggcttattctattaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaattcactatggaaaaatccaagtttactgaaatgcaatggcttattctattaggcc 260

                                                                       
Query: 61  actgaaatgactaactttaatactcagcttgctataatgcagaatcaccaaggtgaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgaaatgactaactttaatactcagcttgctataatgcagaatcaccaaggtgaaaat 320

                                                                       
Query: 121 ctcaatgaaggattgtatccattgggttgacctatggacatgtctcaggacaatggtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaatgaaggattgtatccattgggttgacctatggacatgtctcaggacaatggtgta 380

                                                                       
Query: 181 ttatcttcattaagttagttgatgttgaaagatgaagttcatagtgaatggcaccacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatcttcattaagttagttgatgttgaaagatgaagttcatagtgaatggcaccacaga 440

                       
Query: 241 catgcatttcca 252
           ||||||||||||
Sbjct: 441 catgcatttcca 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)