NNNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTAGCTGCAGCACTTAATATCTAATATTTACATGTTTTAA
ATATTATATATATAGACTTTCCATTCGTAGAAAAATGTAATCACTTCTAC
GCCCTATTAGTTAATTTGTGTGACTCCCATTAATGCTACCCTAATGAAAC
ATGTACACCAGTAGAGTCTGAGTTGCATTCCGACTAAGTACAGTGAGCAC
AGAGATGTAAATATGATACTATCTGTTAGATTCCTAGAATAAGGTAATTG
TCCAAGTACATCCTTTGTTTCTTTTGACCCCAAATTTTGAAGAAATGATG
TTCCTTGCTTATTTTATAGAAATAAGCCATAAATTCAGGCCAACCATTCC
ACTACCTGTATTCTTTACAAAATAACTCATATTTAATGTATTACATTGTT
TTATTTTTTAAATAGTCCTTGTCAATATTGTGTGTGCTCTACCCCAGCCT
TGAACAGCTGGATCAGACCTTGTTTACCACAGTTGCTAGCTCACCTATGG
TGGAGTCTTTCAACCTAGGTAAAGTCCTGCCACTTCTGCAGCTTCCTACA
AGAAGCCACTACCTGCTGAACAGCTGAGCTTGTCTTCCTGATGAGGTCCT
GGCAACGTGTGTGTGTGTGTGTGTGGNTGTGTGTGTGTTTTTNTNNTTTT
TNNTTT

TTTCCCGAATAGATAAGATGGAGTNGGNCCTTAGGTAGAATCGCCCTTAT
AATGCATTCAGGGGGGGGGGGNNGAANNNTAGTAGGAGAGTTTATTTCGT
AGAATNAAGACGAACTAAANTGTAAATATAATAGTTTATANTAGTTACTT
TATAAATATGTGTGTGTAGTTTGTTGTGTTTCTGCCTATTTTGTATTAGT
GTTGATGATANAATAAATAGATTTTATTATAATAAGTATACTATATATGA
GGTATAATGTGNCTCGATGTTAGATTGATAATCACAAAGAGTTAGTATAA
AGTTGGTTATTATCACCATTTAACCATATACTAGAAAATTCATAGATATG
ACTGGAATGTAGTAGACAGAATAAAGAGAGATAAATAAGAAATAGTTTAA
ACACTGCATCTGCTAATTCCAGATATATACATTTCTTAAATATAAAACAA
AGGTACACTGAGGTTCTATTATTCAGCATGCGTGCCGATGTGTCCACATT
ATTTGTGTTTGTTAGGGTTGAGTGTGAAATCACAAAGGTATAGTATTCCC
AACAGACAGATAATATGTTAAATTTTACACTACAACAATCCTCAAAGAAT
GACAATGATTAACAAATATAATTATGCAAACATACACGATCTTAAATGTC
GTTTATTATTTTATCACCACCCACCACAATAGAGTAGAAAGTGATAATTT
GATTAAACATGATTTAAGACGTACCGCGCATGAGAAGAACGTTTATGATA
TAGTGCCGTCTCGTTATGTTTGATGAGTGTGTNGTAGATTACTAATAGAA
GATCAGTGTCGCGGGAGAAAAAGTGCAATTATAATACCTTTATCATACGA
ACGACATCAAATTGAGTGTAGTTGTATGGCTTCTAATAACATACACGGAT
ATACGATACTAAATATAGATTACCAATGAAGAGCAAGAAATGAATATATG
AGGTATAATATAACGATGTTACATATATATATATTAAGTGCGTTATGTCT
CGCAACATTATGTGATAGATATAAATATGTTATTTAAGTAACAATGACGA
GGAGATGCGTCGAATTATTAGAGGGGGCGAATGCGCTTGTCTAATCGCGT
GTAATGACACCGTGTTCCTATCCTCGTATGCTCATGATGCCGACGTGATA
TGTGCGAACATCTCACACAGCTCTTTGATANCACTCTA

Query= MSMg01no145_g03.b1 MSMg01no145_g03.b1 CHROMAT_FILE:
MSMg01no145_g03.b1 PHD_FILE: MSMg01no145_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:27 2005
         (642 letters)



>mm_chr3_81419318_81420359
          Length = 1042

 Score = 1176 bits (608), Expect = 0.0
 Identities = 624/630 (99%), Gaps = 2/630 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtagctgcagcacttaatatctaatatttacatgttttaaatattatatatat 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gaattcagtagctgcagtacttaatatctaatatttacatgttttaaatattatatatat 574

                                                                       
Query: 65  agactttccattcgtagaaaaatgtaatcacttctacgccctattagttaatttgtgtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 agactttccattcgtagaaaaatgtaatcacttctacgccctattagttaatttgtgtga 514

                                                                       
Query: 125 ctcccattaatgctaccctaatgaaacatgtacaccagtagagtctgagttgcattccga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctcccattaatgctaccctaatgaaacatgtacaccagtagagtctgagttgcattccga 454

                                                                       
Query: 185 ctaagtacagtgagcacagagatgtaaatatgatactatctgttagattcctagaataag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctaagtacagtgagcacagagatgtaaatatgatactatctgttagattcctagaataag 394

                                                                       
Query: 245 gtaattgtccaagtacatcctttgtttcttttgaccccaaattttgaagaaatgatgttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtaattgtccaagtacatcctttgtttcttttgaccccaaattttgaagaaatgatgttc 334

                                                                       
Query: 305 cttgcttattttatagaaataagccataaattcaggccaaccattccactacctgtattc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cttgcttattttatagaaataagccataaattcaggccaaccattccactacctgtattc 274

                                                                       
Query: 365 tttacaaaataactcatatttaatgtattacattgttttattttttaaatagtccttgtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tttacaaaataactcatatttaatgtattacattgttttattttttaaatagtccttgtc 214

                                                                       
Query: 425 aatattgtgtgtgctctaccccagccttgaacagctggatcagaccttgtttaccacagt 484
           |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 213 aatattgtgtgtgctctaccccagccttgaacggctggatcagaccttgtttatcacagt 154

                                                                       
Query: 485 tgctagctcacctatggtggagtctttcaacctaggtaaagtcctgccacttctgcagct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tgctagctcacctatggtggagtctttcaacctaggtaaagtcctgccacttctgcagct 94

                                                                       
Query: 545 tcctacaagaagccactacctgctgaacagctgagcttgtcttcctgatgaggtcctggc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  tcctacaagaagccactacctgctgaacagctgagcttgtcttcctgatgaggtcctggc 34

                                         
Query: 605 aacgtgtgtgtgtgtgtgtgtggntgtgtg 634
           || |||||||||||||||||||  ||||||
Sbjct: 33  aatgtgtgtgtgtgtgtgtgtg--tgtgtg 6


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)