BAC Information

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BAC

Clone NameMSMg01-145M07
Chromosome3 (Build37)
Map Location 142,076,957 - 142,077,247
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc5c, LOC100039923, Bmpr1b, Gabarapl2-ps3, Pdlim5
Downstream geneGbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145M07.T7 (MSMg01no145_m07.b1)MSMg01-145M07.TJ (MSMg01no145_m07.g1)
ACCAG349483AG349484
length744741
length of high quality
(start - end)
293 (47 - 339)223 (81 - 303)
definitionCHROMAT_FILE: MSMg01no145_m07.b1 PHD_FILE: MSMg01no145_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:57 2005CHROMAT_FILE: MSMg01no145_m07.g1 PHD_FILE: MSMg01no145_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTCAAAATTTGCGGCGCTAAACGACTCCTATATCCAGAGATCCGCG
GAATTCTTTTATGATCCCTTCTCTGGGGACAGAGAAAGAATTCCCATCTC
TCTGCTTCTCAAACTCCATGGTATCATGTTTNTGGAGAAGGAGGTTCCAA
GTTCCATTAATGTGGGTTGATACAAATTCTTAAAAGTTAAGCCCAAACAA
AAGAAAAACATCAGGGGAAAAAGTTCATCATAGCCCACTGACTGCAAACA
CAATTGGTTGTGATGCTTGTCAAAAATGGATCTCCTCCTCCACCAACGTG
GTTGGCTAGAGGACCATCTAGTCCCGACTACGTAGTATCAAAGTGGTATG
ATACTAAGAATGTGTCTTGCTATACCATTTCTATATTAAGAACACCTAAA
TAATTTATCACAGTTTCATTACCCCACGCACATATAAAATGTTGCGAATA
AAGAATTCCCGCCCCAAGGGAATTTCCCTTTTATATTTTTAATTAAAAAA
ATAAGCTTTCCCTTTAAAAATACAAATTCTAAACTTTTTGTGTCCAGGGA
AATTTTGCCCATTACATTTTTTTTTTCTCTTGTAATTTTCCCTTTGCGCC
CCGCCCCCCCCCGTTGTCNTTATATCCTTTTCATTTACTTTTCCTACCAC
CCTACTATCTCTAAAAAAAGAACGGTCTATATATATAGAATGATATATCC
CATTAATTGGGTACTAATATTTAAAATATATATTTTTTATTCAN
TTCTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCCAGGATACTGTCTCT
GGGACCATGCAGATGGTCACTCTGACCAGTGAGAATGGGAGCTTGTCAGA
TCTGGATTAGCAAGGGTGGATCTCTTGTGATAGCTGAGCTGGAATGCAAA
CCTGCAGGGTTTCTAGATCTGAGTCAGAAGGCACCAATGTTGTGATCATA
AAAAGATAAAGGAATATAAGAATATGTTCTATAGGGTGTGGTGAGGTGTG
GGGGAATTCCCTTTCCTATTCCTTTTTTTTTTTTTTCCACCTTTTCTCCT
CTTCCCTTTTCTATTTTTATTCCTTCCCCTCTCCTCTCCTCTTTCTCCCC
TCCTCCTTACCTTTTCCGTTCCCCCCCCCCTTGGTACATTTTCTACTTTC
TTCTCCCCTTCTTCTTTTCTTTCTTGTTCTCTCCTTATTGTCCCTTGTGC
GTTTTCTCCTCCGTTCGTTTCTTCTTGTCTCGTATTTTTACCCTTTATTT
GCTTCTTCATTCTTTTTACCTTAACCTATTTTCATCGTCCCTGTTACTCC
TTTCCTTCTATTTTTTCTATTCTCCCTCTCCCCATTTTCCCTCTTATTTT
TCTTATCCTGCATCGTCCCTACTTTCCATGTTTCTCTCTATTGTTCTTAT
CTCTTCTTTCTTACACATTTTTCGTTCTCCTTTTTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_m07.b1 MSMg01no145_m07.b1 CHROMAT_FILE:
MSMg01no145_m07.b1 PHD_FILE: MSMg01no145_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:57 2005
         (293 letters)



>mm_chr3_142076753_142077447
          Length = 695

 Score =  478 bits (247), Expect = e-139
 Identities = 281/293 (95%), Gaps = 6/293 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttatgatcc--cttctctgggg-acagagaaagaa-ttcccatctctctgct 60
           |||||||||||||| ||  ||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 205 gaattcttttatga-cctacttctctggggcacagagaaagaaattcccatctctctgct 263

                                                                       
Query: 61  tctcaaactccatggtatcatgtttntggagaaggaggttccaagttccattaatgtggg 120
           ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 264 tctaaaactccatggtatcatgttt-tggagaaggaggttccaagttccattaatgtagg 322

                                                                       
Query: 121 ttgatacaaattcttaaaagttaagcccaaacaaaagaaaaacatcaggggaaaaagttc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 323 ttgatgcaaattcttaaaagttaagcccaaacaaaagaaaaacatcagggggaaaagttc 382

                                                                       
Query: 181 atcatagcccactgactgcaaacacaattggttgtgatgcttgtcaaaaatggatctcct 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atcatagcccactgactgctaacacaattggttgtgatgcttgtcaaaaatggatctcct 442

                                                                
Query: 241 cctccaccaacgtggttggctagaggaccatctagtcccgactacgtagtatc 293
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cctccaccaacatggttggctagaggaccatctagtcccgactacgtagtatc 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 695
Length adjustment: 9
Effective length of query: 284
Effective length of database: 686
Effective search space:   194824
Effective search space used:   194824
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)