BAC Information

Click to search

BAC

Clone NameMSMg01-146B02
Chromosome3 (Build37)
Map Location 27,768,332 - 27,769,014
singlet/doubletsinglet
Overlap geneE030011K20Rik
Upstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
Downstream genePld1, Tnik, Slc2a2, EG624446, Eif5a2, Rpl22l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146B02.T7 (MSMg01no146_b02.b1)MSMg01-146B02.TJ (MSMg01no146_b02.g1)
ACCAG349703AG349704
length1,1901,251
length of high quality
(start - end)
682 (92 - 773)337 (79 - 415)
definitionCHROMAT_FILE: MSMg01no146_b02.b1 PHD_FILE: MSMg01no146_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:24 2005CHROMAT_FILE: MSMg01no146_b02.g1 PHD_FILE: MSMg01no146_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAATTTTTTNNNNTAACAGTGGGCGCTNXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGGATAGNGAAAGACCCTGTAACACGAAACAACATAT
AAGTATGTAGGAATGACACCTACAGATGCTCTTTGGCCCCCACATACATG
CACACGCATGCATCTGCACACATATGAACACGCATGCACATGAAGACACA
AACATAAACACATGCTCACAGAGAAAGACTTGTTTGCAGCCTTCTGGGGA
GATTTGCTTCATCTCGACGGTATATTGCTTTGTGCTACAGCTGTTTAAGC
TACCACCCATTTTAATTATTTCCTTGACATCACTGGTATAACTATCATTC
TCTTTGGAAAAGGAAAGATGGTATAAGAAACACTGATGTGAAAATTCAAT
TTAAAAATTCATAAAAATGATGATCCTTTTGACAATATGCCTCGAGATTA
TTTTCACTAAGTCTTTAGGTTACAGTTTTCTGCCTAACATGCCAAGGGAG
GGCATCAGGGCACATATTTCTTCCTTAAAAGGAAAAAAGATATTAAGGAT
TATCCAGAGTTAGATTTTTGCTCAAAGTCCAACAAGTGTAGCAAGATAAA
CTGTGTTATTTACATTGATGTGCTCATGAATATTAATTTGATAGCTTTCT
AGTATTTTTATTTCTTTATAAAACAACTGTAGACAGGCATAGCCATGCAG
ATCTGTAACTTAGCACTTGGGAAGTAGAGGCAGGGTTAAGGAGTTCAAGA
TCAGCCTCAACTGCAAGGCCACTGAGAACCCTTGTCTTAAAAGCTGACAT
TCCTGAGGATGGCCGCTGATGTCTTCTGAGCTTTTTTCACACATGCAAGC
AGATAAACATGTACAGAAATACAATAAAATGATTTTTAAAAACCATAGGT
TTGTTCACCCAACTGGCGAGGAATAATTAGAAAGATCCACTTGTCCTGTG
GTAATTGCCATTTTTTTTTAAAACTTGGAAAAAAATATCCTGCCCAAAAA
AGATGGGAATCCCTTTGTCAATAAAATTTTGCCCATTTTGCCTTGGGGGG
TTTTTCTTAAAACTCTCGTTTGAAAGGAGGGTTTAAAATTCCTTGAAAAT
CCCCTTCTTTCTCTTTTCTTACCCTTTCTTTTTCTTCTCCTATCATTCCC
TTTTTCTTCCCTTACGTTTATCTTTCCTTCTCTCTGGGTT
TTTTTGAGATTGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTAAGCATGAGGACCCGAGGTGAAATCCCTAG
CTCCCATGATAAAGAAGTCAGGCATGCCCCCCAGAGAGAGGGATCTGTGG
TTGAGGACATTTTACTGCCCAATCAGAACTGGAGTTCGGATTTCATACAA
TAAGCCAGGCACCCTGCATATTCCTACAACACCAACTGCAGGGGTGGGGG
GTAGGGTGTGAGCTGCTGGAGTTTCCCCAGAGCTTACTGACTTCCAGCCT
GGGTGAGGAAATATGGGTTCCAGTTTCAGGGAGAGGCCCCACTTCAAAGG
AACAGGGAGACGATGGATGAGAAGGACATCAGCTCCCTCGTCTTTTTTTC
ACTCCCCCTCAGAGGTGTACGCGTACACACACACAGGCATAAACTTATAC
ACACACATTACCACACAAGTTAATAAACACATCTTTAAACACTCGTGCCT
GTAAAGCCAATTCTGTAGGATAAAACCAGGTAGCTCTTACAAGCTCCCTG
TTCGTCCTGCCTATCCTGACTGGTGTTCTTCTTGCTCTTTGATAGACCTT
GTCTCTCAGCTTTGTTTATAGTGTTATGATATCCCTCTTTCTTCTTCATT
GTACACACTGTATCTTAATTCCACTCTCATTTATTATCCTCCTACTATGT
TTATCCAGTGTATCTCGTTTTTTTCTGCTCCCTTTTTTTTTCCTTCTGCT
TAATAATTATTCTATTCCTTTGTTTTTCTGTGGCCTTTTTTCTATTTCTC
TCTTTTTCCTCTCTTCTTCCTTTCCTTCTTTTTCTCTTTCCTACTCTTTC
CTTTCTCTGACTCTTTTTCTATCACTTCTCAATTCTCTTCTATCTTCATT
TTTCTCTTTTTTTTCACTCATATTTCTCTTTTCATCTTCTCTATTTCTTC
CTCTTCCTATCTTTTCTTCTCTTTCTTCTATTTTCTCCTTCCTTCTTCAC
TTTACTTTATCCTCTTTTTCTCCCATCACTTCTCTAACTTATTTCATCTA
TCTATCTCATCTCCTTCTCTCTCTTTTCTTTCCTCCCTCTAATCCCTCTC
TCTCTTCTTTTTTCCTTTCATATATTCTCTCTCCTACCCTCTTCCCTCTT
CTTCTTATATTCTTCTCTCTCTCTCTTTACTTTCTTCTATCTCTTTTTTC
TTCTCCCTTTCTTCTCTCTCTCTTTCTTTCTTCTCTCCTCCTTCTCTCTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_b02.b1 MSMg01no146_b02.b1 CHROMAT_FILE:
MSMg01no146_b02.b1 PHD_FILE: MSMg01no146_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:24 2005
         (682 letters)



>mm_chr3_27768132_27769213
          Length = 1082

 Score = 1220 bits (631), Expect = 0.0
 Identities = 669/683 (97%), Gaps = 3/683 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaacatataagtatgtaggaatgacacctacagatgctctttggcccccacatacatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 201 acaacatataagtatgtaggaatgacacctacagatgctctttggtctctacatacatgc 260

                                                                       
Query: 61  acacgcatgcatctgcacacatatgaacacgcatgcacatgaagacacaaacataaacac 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgcatgcatctgcacacatatgaacacgcatgcacatgaagacacaaacataaacac 320

                                                                       
Query: 121 atgctcacagagaaagacttgtttgcagccttctggggagatttgcttcatctcgacggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgctcacagagaaagacttgtttgcagccttctggggagatttgcttcatctcgacggt 380

                                                                       
Query: 181 atattgctttgtgctacagctgtttaagctaccacccattttaattatttccttgacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattgctttgtgctacagctgtttaagctaccacccattttaattatttccttgacatc 440

                                                                       
Query: 241 actggtataactatcattctctttggaaaaggaaagatggtataagaaacactgatgtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actggtataactatcattctctttggaaaaggaaagatggtataagaaacactgatgtga 500

                                                                       
Query: 301 aaattcaatttaaaaattcataaaaatgatgatccttttgacaatatgcctcgagattat 360
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaattcaatttaaaaaggcataaaaatgatgatccttttgacaatatgcctcgagattat 560

                                                                       
Query: 361 tttcactaagtctttaggttacagttttctgcctaacatgccaagggagggcatcagggc 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcactaagtctttaggttacatttttctgcctaacatgccaagggagggcatcagggc 620

                                                                       
Query: 421 acatatttcttccttaaaaggaaaaaagatattaaggattatccagagttagatttttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatatttcttccttaaaaggaaaaaagatattaaggattatccagagttagatttttgc 680

                                                                       
Query: 481 tcaaagtccaacaagtgtagcaagataaactgtgttatttacattgatgtgctcatgaat 540
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 tcaaagtccaacaagtgtagcaagataaactgtgttatttgcattgatgtgctcatgaat 740

                                                                       
Query: 541 attaatttgatagctttctagtatttttatttctttataaaacaactgtagacaggcata 600
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attaatttgagagctttctagtatttttatttctttataaaacaactgtagacaggcata 800

                                                                       
Query: 601 gccatgcagatctgtaacttagcacttgggaagtagaggcagg---gttaaggagttcaa 657
           ||||||||||||| ||||||||||||||||| |||||||||||   ||||||||||||||
Sbjct: 801 gccatgcagatctctaacttagcacttgggaggtagaggcaggagggttaaggagttcaa 860

                                  
Query: 658 gatcagcctcaactgcaaggcca 680
           |||||||||||||||||||||||
Sbjct: 861 gatcagcctcaactgcaaggcca 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)