Query= MSMg01no146_c06.b1 MSMg01no146_c06.b1 CHROMAT_FILE:
MSMg01no146_c06.b1 PHD_FILE: MSMg01no146_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:33 2005
(481 letters)
>mm_chr3_84824175_84825055
Length = 881
Score = 866 bits (448), Expect = 0.0
Identities = 469/480 (97%), Gaps = 8/480 (1%)
Strand = Plus / Plus
Query: 1 taataccatgcactaaaaaaatgctatttttaaaaaaacttaaatgtacttctgtcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taataccatgcactaaaaaaatgctatttttaaaaaaacttaaatgtacttctgtcaaaa 260
Query: 61 gtctggtttttcagaaataattgctgtaggccagataaagatttgcataggattcctaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctggtttttcagaaataattgctgtaggccagataaagatttgcataggattcctaaa 320
Query: 121 atgggctgaatatcatcacagaagagaaatatctgtgattataaagagagtccttgagat 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 atgggctgaatatcatcacagaagagaaatatctgtgattataaagacagtccttgagat 380
Query: 181 tgggggacttgggatgggaaggcaaggttctcctaatattcagaggtgatagagatgaag 240
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 381 tgggggacttgggatgggaaggcaagcttctcctaatattcagaggtgatggagatgaag 440
Query: 241 ttgggacagatagctctcacttcatttt----caccctcctcacaccctgccgcctgacc 296
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ttgggacagatagctctcacttca----gcaccaccctcctcacaccctgccgcctgacc 496
Query: 297 caggtccccagtcttcaccataccctacccaagtgttaattgatatttgtaatttgatgc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caggtccccagtcttcaccataccctacccaagtgttaattgatatttgtaatttgatgc 556
Query: 357 tttgtggctacagctttaacaagtgtattttagggacctcagaattagtgtctcagaatc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tttgtggctacagctttaacaagtgtattttagggacctcagaattagtgtctcagaatc 616
Query: 417 gattctgagaaaaccattactgacatataataagatttataatagaaaaagcaaaaataa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gattctgagaaaaccattactgacatataataagatttataatagaaaaagcaaaaataa 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_c06.g1 MSMg01no146_c06.g1 CHROMAT_FILE:
MSMg01no146_c06.g1 PHD_FILE: MSMg01no146_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:34 2005
(508 letters)
>mm_chr3_84941770_84942677
Length = 908
Score = 830 bits (429), Expect = 0.0
Identities = 454/467 (97%), Gaps = 9/467 (1%)
Strand = Plus / Minus
Query: 1 tggttgggactcatttcaagttcctctacatgatcaaccctgaccatgaggggaagcact 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tggttggggctcatttcaagttcctctacatgatcaaccctgaccatgaggggaagcact 401
Query: 61 gtcctgggttccagggttaatatccatccttactgctggtgggaccaggctatgcttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtcctgggttccagggttaatatccatccttactgctggtgggaccaggctatgcttctc 341
Query: 121 tgtgaaagagagggacttctgatgacccaagtcctaggatcctggagtcctagagtttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgtgaaagagagggacttctgatgacccaagtcctaggatcctggagtcctagagtttga 281
Query: 181 atgagatttctgatcatcagtttgcttgggatcctttctgctaagcttgaatgaggcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atgagatttctgatcatcagtttgcttgggatcctttctgctaagcttgaatgaggcctt 221
Query: 241 gtggtccgactctgcccatctttttttttttttttttttttt--ccctgagactgatgtc 298
||||| |||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 220 gtggttcgactctgcccatc-------tttttttttttttttccccctgagactgatgtc 168
Query: 299 tcatggtgaacttattcctggagctgagctctgggtaccaatacatctaaaaaggaagtc 358
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 167 tcatggtgaacttattcctggagctgagctctgggtaccaatacatctaagaaggaagtc 108
Query: 359 tgcctgcttggccatggagatccaccactgcacttcactcccccattgtaggcagtaaca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tgcctgcttggccatggagatccaccactgcacttcactcccccattgtaggcagtaaca 48
Query: 419 gtggtaaggctagagtttgtttatgccttggaaaccttacagatgtt 465
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 47 gtggtaaggctagagtttgtctatgccttggaaaccttacagatgtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
