BAC Information

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BAC

Clone NameMSMg01-146D02
Chromosome3 (Build37)
Map Location 40,504,708 - 40,505,433
singlet/doubletsinglet
Overlap geneIntu
Upstream geneLOC100041443, LOC100041458, LOC100040882
Downstream geneSlc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146D02.T7 (MSMg01no146_d02.b1)MSMg01-146D02.TJ (MSMg01no146_d02.g1)
ACCAG349796AG349797
length1,1911,196
length of high quality
(start - end)		722 (137 - 858)627 (138 - 764)
definitionCHROMAT_FILE: MSMg01no146_d02.b1 PHD_FILE: MSMg01no146_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:40 2005CHROMAT_FILE: MSMg01no146_d02.g1 PHD_FILE: MSMg01no146_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCAATCCTTTTNNNTACACTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCACATTATTTAAAACTCCTTATAAATCCCCAAGGTATACCAA
AATGGCAATAAATTACCTATCTTGTCTCTATACCCCGATCAAGTACCAGC
TCAGAGTCTTGTATAATACCACACGTGAACTGATGGACCAACCCAATAGG
ATTGCATCTCAGTATTTAACGAGTACTATAGTGAATAGTGAATGTACTGA
GCCTTATCTCTGTATGATGATTTCTGTCATTCTGACGATGTCCTGTGGTC
CATCGGTGTGTTGCTTTGCATCTTACAAACACAACTACAACGTTAACCCA
AAGAACAATTTAAATGCCATTTCAATGGCAATTTCTGAGACTGAGTCGTG
AATTTAGACATATAGTTCCTGAGGTTTTGGGTTAAGAAAGAGCCGCCTGC
AGAAAGAAAAGAACATGGTCATTTCAGATATTAAGGTGATACAGTCCCTT
CTGTTTGTTTTCTTTCAATTTTGAGAGAATCAGTAATAAACTGAAAATAA
AAACAAACAAACAAACAAAAAACACCACTGCACCAAAACCTCATGAATCT
AAATCTACAGAAAACAGAATACAGCCCAGTTTTTAAATAATGTATGTCTT
AATTAATGTTACTGTCTTAGAGTGTAGAAACTCCTATTTAATCAATGCCT
ATTACCATACCCCTCAGTCTTAAATATTAAACCTGTTTATTATTACTATT
TAGGCAATACTGGCCATACCATTGTAAGCACAGTAGCCATTAAATATTCT
ATTGGCACTTATATTTTAAATTGATATATTGTTAAAACATTGTATTGTAA
CAGTGACAACTCCTTTGCAGATAAAATTGGACTAACACTACATTTCTCTT
CTTCAGTATTCCTATAGTATGGTTGCATGGTCTAATCTATTATATTTACA
CACCCCTTTTACCTTACCATATATATTCATATTTACTTATACCTACCTAT
ATATATATATCCATATTGTATCTAATAACACATTGTTAATGTACAATATT
TCCAAAATTCCTCTACAAAAAGTAAAGGTTTTAAAGATTAAGGGTTTTTT
TTTGCCCTCGGGGTTTTAACAACCAATCCCTCTTGGTCCCCCCCGGGATT
GGCCCACAAAAAATCCTCATTTATATATCCTTTTTTTTTTT

CCTTCTTTCTTTTACCACGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTTAACCCGAGGAATACCGAATGG
NAGAGAAGCACCTGACATAATGTTCAACATCCCCCCCCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGAA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTA
AGAATTACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT
AAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATT
TCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTA
TGCCCCTCTTTAGAAGTGGGAACAAAACACCCTTGGAAGGAGTTACAGAG
ACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTATAGACTGCCATA
TCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATA
CCCTACCAAGATTTTATCGCAAGGGACCCAGATGTAGCTGTCTCCTTGGT
GAGACTAATGCCGGGGCCCTAGCTAAACACAGAAGGTGTATGCTCCCCAG
TCCTCCTTATTGTTAGGTGATCCCAGGGTCTTCCCAAGGATAGGAACCTT
ATATAAAAAGTTCCCCCAGGTTACCTTATAGGGGAATTCTTGTCAACCCC
TATTTAGTGTGGGTATCCACCCTTTTTGGTAACTTATATCGCGGTACCCC
CTTGGGATTCTCCTCTGTGACTCTTTAGACTGTTCCAATTTGTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_d02.b1 MSMg01no146_d02.b1 CHROMAT_FILE:
MSMg01no146_d02.b1 PHD_FILE: MSMg01no146_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:40 2005
         (722 letters)



>mm_chr3_40504508_40505633
          Length = 1126

 Score = 1299 bits (672), Expect = 0.0
 Identities = 711/726 (97%), Gaps = 4/726 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatcaagtaccagctcagagtcttgtataataccacacgtgaactgatggaccaacccaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 926 gatcaagtaccagctcagagtcttgtataataccacacatgaactgatggaccaacccaa 867

                                                                       
Query: 61  taggattgcatctcagtatttaacgagtactatagtgaatagtgaatgtactgagcctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 taggattgcatctcagtatttaacgagtactatagtgaatagtgaatgtactgagcctta 807

                                                                       
Query: 121 tctctgtatgatgatttctgtcattctgacgatgtcctgtggtccatcggtgtgttgctt 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 806 tctctgtatgatgatttctgtcattctgacaatgtcctgtggtccatcggtgtgttgctt 747

                                                                       
Query: 181 tgcatcttacaaacacaactacaacgttaacccaaagaacaatttaaatgccatttcaat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tgcatcttacaaacacagctacaacgttaacccaaagaacaatttaaatgccatttcaat 687

                                                                       
Query: 241 ggcaatttctgagactgagtcgtgaatttagacatatagttcctgaggttttgggttaag 300
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 686 ggcaatttctgagactgagtcgtgaaaacagacatatagttcctgaggttttgggttaag 627

                                                                       
Query: 301 aaagagccgcctgcagaaagaaaagaacatggtcatttcagatattaaggtgatacagtc 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 626 aaagagccgcctgcagaaagaaaagaacatggtcatttcagatattaaagtgatacagtc 567

                                                                       
Query: 361 ccttctgtttgttttctttcaattttgagagaatcagtaataaactgaaaataaaaacaa 420
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 566 ccttctgtttgttttctttcagttttgagagaatcagtagtaaactgaaaataaaaacaa 507

                                                                       
Query: 421 acaaacaaacaaa----aaacaccactgcaccaaaacctcatgaatctaaatctacagaa 476
           |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acaaacaaacaaacaaaaaacaccactgcaccaaaacctcatgaatctaaatctacagaa 447

                                                                       
Query: 477 aacagaatacagcccagtttttaaataatgtatgtcttaattaatgttactgtcttagag 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aacagaatacagcccagtttttaaataatgtatgtcttaattaatgttactgtcttagag 387

                                                                       
Query: 537 tgtagaaactcctatttaatcaatgcctattaccatacccctcagtcttaaatattaaac 596
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 386 tgtagaaactcctatttaatcaatgcctattaccatactccttagtcttaaatattaaac 327

                                                                       
Query: 597 ctgtttattattactatttaggcaatactggccataccattgtaagcacagtagccatta 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctgtttattattactatttaggcaatactggccataccattgtaagcacagtagccatta 267

                                                                       
Query: 657 aatattctattggcacttatattttaaattgatatattgttaaaacattgtattgtaaca 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatattctattggcacttatattttaaattgatatattgttaaaacattgtattgtaaca 207

                 
Query: 717 gtgaca 722
           ||||||
Sbjct: 206 gtgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1126
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1116
Effective search space:   794592
Effective search space used:   794592
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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