Query= MSMg01no146_e01.b1 MSMg01no146_e01.b1 CHROMAT_FILE:
MSMg01no146_e01.b1 PHD_FILE: MSMg01no146_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:48 2005
(785 letters)
>mm_chr3_25956165_25957351
Length = 1187
Score = 1440 bits (745), Expect = 0.0
Identities = 776/787 (98%), Gaps = 2/787 (0%)
Strand = Plus / Plus
Query: 1 caaagtccttaattaaccttaagaatattatccaggagctggacaaatagcccgattaag 60
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct: 201 caaagtccttaattaaccttaagaatattatctaggagctggacaaatagtcagattaag 260
Query: 61 tctttctgtcaagcttaaggacctgagttcagcactgaagcatccacataagaagctgaa 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttctgccaagcttaaggacctgagttcagcactgaagcatccacataagaagctgaa 320
Query: 121 catggcagcaggagcccatattcttagcactggacaggcagagtcaggaggatctctggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggcagcaggagcccatattcttagcactggacaggcagagtcaggaggatctctggc 380
Query: 181 tcaccagtcaataggtgagtttcaggtgccatgagaaaccctgtctcagaaaacaagtaa 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaccagtcagtaggtgagtttcaggtgccatgagaaaccctgtctcagaaaacaagtaa 440
Query: 241 atagcaacagaggatgacatctaaagttgacctctagcctccaacagacattcgtacaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagcaacagaggatgacatctaaagttgacctctagcctccaacagacattcgtacaca 500
Query: 301 atttggtgcatgcacatgcagttatgtg--cacactcacacacacacacgtggacacaca 358
||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 501 atttggtgcatgcacatgcaggtatgtgcacacacacacacacacacacgtggacacaca 560
Query: 359 cctgcaaggaagcattggaaacttgaacaacaaaaagaaaagagacattcttgcttctgc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgcaaggaagcattggaaacttgaacaacaaaaagaaaagagacattcttgcttctgc 620
Query: 419 tacagatggaaggagtcaggcagttatttcatgtctttgtcctttctggggtcatttcca 478
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 tacagatggaaggagccaggcagttatttcatgtctctgtcctttctggggtcatttcca 680
Query: 479 aagtaaatgcaaaataatcaaagaatacctttgctacttcacaacaattcattacagaaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtaaatgcaaaataatcaaagaatacctttgctacttcacaacaattcattacagaaa 740
Query: 539 tagtaatggacatacctgcaataaggagagaactgcataaaatgtatatgctgatcttca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagtaatggacatacctgcaataaggagagaactgcataaaatgtatatgctgatcttca 800
Query: 599 acccagtcagtgaatgtcaacacaaattatctcattaaacataaaatgcggaaatacacc 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acccagtcagtgaatgtcaacacaaattatctcattaaacataaaatgcggaaatacacc 860
Query: 659 aggaatctacatattgttgtctaataactgctgcattcttaggtattattttaagacaac 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aggaatctacatattgttgtctaataactgctgcattcttaggtattattttaagacaac 920
Query: 719 gtgcatgctttcttaacaccataatttttctttgtacttctttacttacaatacaagaat 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gtgcatgctttcttaacaccataatttttctttgtacttctttacttacaatacaagaat 980
Query: 779 ttcttaa 785
|||||||
Sbjct: 981 ttcttaa 987
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 785
Length of database: 1187
Length adjustment: 10
Effective length of query: 775
Effective length of database: 1177
Effective search space: 912175
Effective search space used: 912175
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_e01.g1 MSMg01no146_e01.g1 CHROMAT_FILE:
MSMg01no146_e01.g1 PHD_FILE: MSMg01no146_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:48 2005
(558 letters)
>mm_chr3_26094250_26095209
Length = 960
Score = 930 bits (481), Expect = 0.0
Identities = 548/589 (93%), Gaps = 32/589 (5%)
Strand = Plus / Minus
Query: 1 accatcattctgaccctacagagttccacttaggttttacattttgactgtctg------ 54
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 893 accatcattctgaaactacagagttccacttaggttttacattttgactgtctgcacaca 834
Query: 55 ------------cacacacacacacacacacac--acacacacacacacacacacacaca 100
||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 833 cacatacacacacacacacacacacacacacacatacacacacacacacacacacacaca 774
Query: 101 cac----------agagggggggatgtttgaatgactttcttaaactgtctatgtgatgt 150
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 cacagagagagagagagggggggatgtttgaatgactttcttaaactgtctatgtgatgt 714
Query: 151 ttttatttgtgaattaattagaaaaacaaaatcttaaaaagagaaaatgacaagaataaa 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttttatttgtgaattaattagaaaaacaaaatcttaaaaagagaaaatgacaagaataaa 654
Query: 211 aaatccctggaagttctatcattctgtacagaattaacattctttttcttattatgacaa 270
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 653 aaatccctggaagttctatcattctggacagaattaacattcattttcttattatgacaa 594
Query: 271 taaatctgttatcattgaccacaaatgccttgggtgagctgtcctttggcgtttgagaag 330
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 taaatctgttatcaaggaccacaaatgccttgggtgagctgtcctttggcgtttgagaag 534
Query: 331 gaaaccattttgcttggcttgtttatcatggtacaagtgttgagtgttgctggataaggc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gaaaccattttgcttggcttgtttatcatggtacaagtgttgagtgttgctggataaggc 474
Query: 391 tttctcttgagagacttgcatttagtctcctctttcctactcattccctaacctatacta 450
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 473 tttctcttgagagacttgcatttagtctcctcttttctactcattccctaacctatacta 414
Query: 451 ttcataaacaattatcttctattttttt--aatataatgttactttatgtgtttattatt 508
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 413 ttcataaacaattatcttctattttttttaaatataatgttactttatgtgtttattatt 354
Query: 509 gttctattcagatctgttcccatttcatctaaccgttccatttttagta 557
||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 353 gttctattcagatctgtccccatttcatctaaccgttacatttttagta 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 960
Length adjustment: 10
Effective length of query: 548
Effective length of database: 950
Effective search space: 520600
Effective search space used: 520600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
