Query= MSMg01no146_g09.b1 MSMg01no146_g09.b1 CHROMAT_FILE:
MSMg01no146_g09.b1 PHD_FILE: MSMg01no146_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:07 2005
(672 letters)
>mm_chr3_53694112_53695183
Length = 1072
Score = 1203 bits (622), Expect = 0.0
Identities = 661/674 (98%), Gaps = 4/674 (0%)
Strand = Plus / Minus
Query: 1 catgaatatgtagtccctaagg-tcccttattttagctctaccaccttgaacagcttata 59
|||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||
Sbjct: 872 catgaatatgtagtccctaaggttccc-tattttagctctatgaccttgaacagcttata 814
Query: 60 gttcttaaactattttttttacatctagaaaataaagagactagtaattttgttgtatgg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gttcttaaactattttttttacatctagaaaataaagagactagtaattttgttgtatgg 754
Query: 120 ctgttgttagtaaataaccaaaatcatgttctagccaaaatccaaggcacattatgtgct 179
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 753 ctgttgttagtaaataaccaaaatcatgttctagccaaaatccaagacacattatgtgct 694
Query: 180 cagaaagagcagaactcctttatgcggaagcagggacatgggatgccaaagctatgatgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cagaaagagcagaactcctttatgcggaagcagggacatgggatgccaaagctatgatgt 634
Query: 240 aatgatacattttaaatctctctgtttctagttgggtgttgtattcccttcagctcctgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aatgatacattttaaatctctctgtttctagttgggtgttgtattcccttcagctcctgt 574
Query: 300 aatgaatatttactttgttcttcctttatgcaaggcattactctagaaatggagtacaaa 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aatgaatatttactttgctcttcctttatgcaaggcattactctagaaatggagtacaaa 514
Query: 360 ctggggattcaggagagaccaaaggctgtctctctcaacaatcacctgtcttcaagttta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctggggattcaggagagaccaaaggctgtctctctcaacaatcacctgtcttcaagttta 454
Query: 420 tctagatttatggtttgttgataaacagttacattttttt-caacttcagttttcttgac 478
|||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||
Sbjct: 453 tctagatttatggtttgttgataagcagttacattttttttcaacttcaattttcttgac 394
Query: 479 tttaccactctctatggctgctttgttacttcttgtagagagaaagaaaaaaatctcaat 538
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 393 tttaccactctctatggctgctttgttacttctcgtagagagaaagaaaaaa-tctcaat 335
Query: 539 cttgaagttcaaagagagaattgttgtcaaaaaatcttttctttcttcttcttaaataaa 598
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 334 cttgaagttcaaagagagaattgttgtaaaaaaatcttttctttcttcttcttaagtaaa 275
Query: 599 tacattcccgagcatgattcagagtgttaaacatgttattatccctctctagtggcttat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tacattcccgagcatgattcagagtgttaaacatgttattatccctctctagtggcttat 215
Query: 659 tcctaaggagaaaa 672
||||||||||||||
Sbjct: 214 tcctaaggagaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_g09.g1 MSMg01no146_g09.g1 CHROMAT_FILE:
MSMg01no146_g09.g1 PHD_FILE: MSMg01no146_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:08 2005
(659 letters)
>mm_chr3_53539733_53540793
Length = 1061
Score = 1205 bits (623), Expect = 0.0
Identities = 651/661 (98%), Gaps = 2/661 (0%)
Strand = Plus / Plus
Query: 1 cactggtacccctgaggtagcctgaagtccatggaaggaaaagtctgattatttccctcc 60
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 cactggtacctctgaggtagcctgaagttcatggaaggaaaagtctgattatttccctcc 260
Query: 61 cataaggacagggtcattaggtgtgggcttgagggtttagctccgggtttgtgcaggcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataaggacagggtcattaggtgtgggcttgagggtttagctccgggtttgtgcaggcaa 320
Query: 121 agggaacagagaagtcacacacacacaatcatcccctcagctgacacggaactataagca 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 agggaacagagaagtcacacacacacaatcatcccctcagctgacatggaactataagca 380
Query: 181 gcctgggcaacacactttctaagtctacttactattcttccaaagtagctgcgaaggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctgggcaacacactttctaagtctacttactattcttccaaagtagctgcgaaggctc 440
Query: 241 cgagtttcacaacataccccacagccagcagcctgggaagttttgaggagatttatatat 300
| ||||||||||||||||||||| |||||||||||||||| | ||||||| |||||||||
Sbjct: 441 ctagtttcacaacataccccacaaccagcagcctgggaagctctgaggaggtttatatat 500
Query: 301 atctaacctagaggcgtcttgttcagtcataaaacaatgtcttgtctgtaattttactat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctaacctagaggcgtcttgttcagtcataaaacaatgtcttgtctgtaattttactat 560
Query: 361 tattcccaggaaatcagacccttagatggacaggctgaatgcttcacagatctgatggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattcccaggaaatcagacccttagatggacaggctgaatgcttcacagatctgatggct 620
Query: 421 tccctccgtgcattctctcttcttatgagtacattaaataatattaatatatttttagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccctccgtgcattctctcttcttatgagtacattaaataatattaatatatttttagta 680
Query: 481 agtgactttcttggagaaatacttcagagtttgttttttttt--cctactaataagactt 538
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 agtgactttcttggagaaatacttcagagtttgtttttttttttcctactaataagactt 740
Query: 539 ccagataaacacattacaaaccaacctatgaatcaaattcttgatggtagctatttcctc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccagataaacacattacaaaccaacctatgaatcaaattcttgatggtagctatttcctc 800
Query: 599 ttaactttgtttaaatttatctcatacggtaccctttgcagcactgctaaattcttatat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttaactttgtttaaatttatctcatacggtaccctttgcagcactgctaaattcttatat 860
Query: 659 t 659
|
Sbjct: 861 t 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1061
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1051
Effective search space: 682099
Effective search space used: 682099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
