BAC Information

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BAC

Clone NameMSMg01-146G15
Chromosome3 (Build37)
Map Location 111,220,034 - 111,220,556
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043190, LOC668712
Downstream geneLOC625585, EG229746, LOC668717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146G15.T7 (MSMg01no146_g15.b1)MSMg01-146G15.TJ (MSMg01no146_g15.g1)
ACCAG349959AG349960
length1,2081,239
length of high quality
(start - end)
711 (120 - 830)740 (89 - 828)
definitionCHROMAT_FILE: MSMg01no146_g15.b1 PHD_FILE: MSMg01no146_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:09 2005CHROMAT_FILE: MSMg01no146_g15.g1 PHD_FILE: MSMg01no146_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTTTTTTNTACAATCGCGCTAAGACTCCANAGGGAGAGGATCCGCG
GAATTCTTGTTTTTAAAGCTCATTTAAACTCCATTGTGTAGATGTACCAC
ATTTTCTGTACCCTTTCCGCTGTTGAGGGCCCCCTGGGTTCTTTCCAGCT
TCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCT
TCTTACCAGTTGGGGTATCTTCTGGATATATGCCCAGGAGAGGTATTGCT
GGATCCTCCAGTAGTACTATGTCCAATTTTCTGAGGAACCACCAGACTGA
TTTCCAAAGTGGTTGTACAAGTTTGCAATCCCACCAACAATGGAGGAGTG
TTCCCCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAGTTTTTG
ATGTTAGTCATTCTGACTGGAGTGAAGTGGAATCTCAGTGTTGTTTTGAT
TTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTAAGGTGCTTCT
CTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCTGAGCCC
CATTTTTTAATTGGGGTTATTCGATTTTCTGAAGTCCACCTTCTTGAGTT
CTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAG
ATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGATGGTGTCTTT
TGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCG
ATCTTACAGCACAAATCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTG
CCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGT
CTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGACA
AGGAGATAATTATGGATCGATTCGCATTCCTTCTACTGATAACAACCATT
ATGCCACCTCCATTTGTTGAAAAGTTTTTTTTCTTTCCCTGGAAGGTTTA
TATTCCTTGTCGAAAAATATTGTCCATATTCTGGTGGTTTTATTTTTGGT
TCTTATTATTTTATTCAGGGTTTCTTTTTCTGTTTTCACTTTCATCTGTC
CTTTTTTTATCTACTTTCCTATAATTCTATTTTTTTTCTACACTTCTTAT
TTATCTCCATTGATTCTTCTTTCTTTCAAAAATATTTTTCTCTCTATATC
TTTTCTTC
CCCGTCCATGTTTTTAACATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGTTCCCATCAGATA
CAAAATAAAAAAAGAAAAACACGTGTTTCTACAAAAAAGACCAAGACTAG
TAGCAGCTGTGACTCAGGAGTGGGCTGGGTAGAAATCAATATAAGTGGAA
ACATGCCAGGGAGTTTAAGGTTGAAAACATGTAGAAAAAAATAGAATCTC
TGATTAAGAACATCAACACATTTTTGATTTTCTTTGGCTTTAGACTTAAA
GGTTTGTTTTCACATGAGATTTTCATAGTATTTTAAGCATTGGTATATAT
AGGGAATATTTCAGGCACCATTAATGGATCATAGTGGTTATAAAATGACT
GACACTAGGAATTACCTTAGATGGACTGCCCAACAATAGGGAGAGGGAAC
TTATAGAGCCCACCTCCAGCAGGAAGACAGGGCATCAAGTGAGGGAAGGG
GTTGCCATCCCACAGTCAAAACTCTGACCCAAAGTTGTTCCTGTCTGAAA
GAATAACAGGGATAGAAATGGAGAGGAGCCTGAGGAAAAGAAGCTCCAGT
GACAGGCCCAAAGTGGGATCCAGATCAAGGGGATGCCCCAAGACCTGACA
TCATTACTGAGGCTATAGAGCGCTCAGAAAAAGGGACCTAGCATGATCAC
ATTCCAGAAGACTCAACAACCAGCTGAAAGAGCCAAATGCAGATATCTGT
ATCCAACAAATGGACAGAAGCTGCTGACTAATGAGGTTGAATTAGGGAAA
GGCTGANAGAACCTGAGGAGGAGGGTGACCCTGTAGGAGGAACAGAAGTC
TCTATTATTCTGGACCCCTGAGGTCTCCCAAACACTGGACCATTCACCAA
GCAGGATACACTACTTGATATGAGGCCACAACACATCTACAGCAGAAGAC
TGCTGGGTCTGTGTTCATCAAAAATGAAGCCCCTCCCCCTGTAAGGGCTG
CAGGCTCTAGGGAGTTTAAAGTTCAGCGGGGCTCCGGAATGCGGACTTCC
TTGTGGAAAAAAGGAACTGGCATAATGTTTTGGCTTTTCTCAATTTTCTT
TTTCTTTTTTTTTTTATTTTTTTATTCTTCATTTTTTTTTCTCTTCTCAT
CTCTAATTCACTTTTTTATAATATCTTCTTTTACTCTAATCCTCATTTCA
CTTTCTTTTTTTCTTCTTTTATCTTCCACTCTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_g15.g1 MSMg01no146_g15.g1 CHROMAT_FILE:
MSMg01no146_g15.g1 PHD_FILE: MSMg01no146_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:10 2005
         (740 letters)



>mm_chr3_111220034_111221173
          Length = 1140

 Score =  911 bits (471), Expect = 0.0
 Identities = 510/523 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccatcagatacaaaataaaaaaagaaaaacacgtgtttctacaaaaaagaccaagact 60
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||  ||||||
Sbjct: 523 tcccatcagatacaaaataaaaaaagaaaaaaaagtgtttctacaaaaaagaagaagact 464

                                                                       
Query: 61  agtagcagctgtgactcaggagtgggctgggtagaaatcaatataagtggaaacatgcca 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 463 agtagcggctgtgactcaggagtgggctgggtagaaatcaatataagtggaaaaatgcca 404

                                                                       
Query: 121 gggagtttaaggttgaaaacatgtagaaaaaaatagaatctctgattaagaacatcaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gggagtttaaggttgaaaacatgtagaaaaaaatagaatctctgattaagaacatcaaca 344

                                                                       
Query: 181 catttttgattttctttggctttagacttaaaggtttgttttcacatgagattttcatag 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cattttagattttctttggctttagacttaaaggtttgttttcacatgagattttcatag 284

                                                                       
Query: 241 tattttaagcattggtatatatagggaatatttcaggcaccattaatggatcatagtggt 300
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 283 tattttaagcattggtatatgtagggaatatttcaggcaccattaatggatcatagtgat 224

                                                                       
Query: 301 tataaaatgactgacactaggaattaccttagatggactgcccaacaatagggagaggga 360
           |||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||
Sbjct: 223 tataaaatgactgacactaggaaggaccttagatggaatgcccaacaatagggagaggga 164

                                                                       
Query: 361 acttatagagcccacctccagcaggaagacagggcatcaagtgagggaaggggttgccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 acttatagagcccacctccagcaggaagacagggcatcaagtgagggaaggggttgccat 104

                                                                       
Query: 421 cccacagtcaaaactctgacccaaagttgttcctgtctgaaagaataacagggatagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 cccacagtcaaaactctgacccaaagttgttcctgtctgaaagaataacagggatagaaa 44

                                                      
Query: 481 tggagaggagcctgaggaaaagaagctccagtgacaggcccaa 523
           |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 43  tggagaggagcctgaggaaaagaagctctagtgacaggcccaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 740
Length of database: 1140
Length adjustment: 10
Effective length of query: 730
Effective length of database: 1130
Effective search space:   824900
Effective search space used:   824900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)