BAC Information

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BAC

Clone NameMSMg01-146H15
Chromosome3 (Build37)
Map Location 72,325,394 - 72,326,071
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146H15.T7 (MSMg01no146_h15.b1)MSMg01-146H15.TJ (MSMg01no146_h15.g1)
ACCAG350005AG350006
length1,2451,208
length of high quality
(start - end)
519 (125 - 643)675 (142 - 816)
definitionCHROMAT_FILE: MSMg01no146_h15.b1 PHD_FILE: MSMg01no146_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:17 2005CHROMAT_FILE: MSMg01no146_h15.g1 PHD_FILE: MSMg01no146_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACATATTTTNNTTACATTGGCGCTATAGACTCCTAAGGGAGAGGATCCG
CGGAATTCTAGGTAAAATGTTACCCTATAAGGAGTGGGNAAATCCCTCAT
CAGGAGGTCATGCCCTTTTATGGAAAGTGGCCCCCACAGGTTTTATCTAC
CATTTGTGAGTATGTCAGCTAAAGTCATTACATTGGGTCCTGGGAACCTC
TTGATTTTCTGGTTTCTGGGATTTTTCTAGTGGCTACACCTGTTTCTTAC
CCCCATATTTTCTTTTTTTTTTACCACCCATGTTTCTATTCATGGTCCTG
ACCCTCTGGACTTCTATTCTGGCACTTCCCACACCTGATCCTGGCCCTCT
TTTTTTCCCCTCATTCACCTATCACCCTCCCAGTCCTCTCTCTCCCTCCC
TTTATTTCCCATGATTATTTATTTATTATTAATTATTATTATATTATTGC
AATATAATATATTTCATTATTATATTATTATTTATTATTTACTATTTTTT
TTATAGCTTTCTTTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTT
ACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTC
CCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGG
GCATATAAAGTTTGCAAGTCCAATGGGCTAATAGCCAGAAGCTGGAAAGA
ACCTAGATGCCCCTCAACAGAGGAATGGATACTGAAAATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGCTCTATGGATGAACCTGTAGGGAATCTTTCTTGATGTAGTAATTCT
TTTATAAAGAATTTCACACTATATGTATTCTCTGATAACTGTATATTAGC
CCCTTATCTAGGATATCCAATATTTTAAAATATATTTTGCTATACCTTTG
AATTTTTTGAAAAATTGAATATTGAAATTGGGTACCTTATGCCCCCTCTT
TAATTTTTGGAAACTAAAATACCCTTGTAATTGATTTTATTAAAATTTAT
ATTTGTATATTGTAAATTTAACCGATTTGTCTTTTGTATAAAATTGTCTA
TTCTCCCTTGTATTCCTCCTCTTTAAATTATATATTCATATATCTCAAAT
CCCTCTGCTTTATCCTTCTACATGTATTCTTTTTTTTCATTGTTTTATAC
ATATGTTTCTTCTTCTTTGTCATAATTATTTTCTTATTTCNATTA
NCCTTTCTTTTTTNTACGATGGCAGCCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTTTAGACATGTGAGAAGAA
AATTTGTATTTGTTGTCTCCTAAGAATTAAGGGACCCCAGTCTCAGAATG
CTGATCCATAGGATAATCAAAAGGGAACCTGGTATAAATAACTGAATTGA
TAAGTAAATAAAAAAAATAGACTTTTAGTCTGCATGAATGATAAGTGTTA
GTCTGCATGAATGAACTTACAGAGCAAGATGGCAATTCCTAGAATTTTCT
CTAAAGAGCTGAGCTGTCTGAGGATGACTAGAGAGTGAAAACAGCTCTTC
AATAATATTTTCTAACAGGATTTCTGACTTCGTCAGAAAATCCAATAATT
TTTTATTTTTGCTTTTCTGACTTTGATCAGAAAACTCAGGAGCTATCTAA
TAGCTTTTACAATTTTTATTAGCAGAGAGAGAGCTGTTCCAACTAGAGAG
TTTTTAGAATAGCAAGGAAAAGCTGTCTAGAAAGGAATAGAACACACAGA
GAGAGAAATCTGGAAGGCTATCTCAGAAAAACCAATGCCACCGTGAGCTT
GAATCCACAACTTGTCTTGGAGATATTTCTTTTCCCTGCTTACAGCCCCC
CCTTTCTTAGATCCCCCCTCCAAGCCAAGGGTGGTCCTTGGCACACAAGG
TTAAGGAAGAGCTCTGCCTACTTTTGCAGATGACTCAATTCATTCCCAGC
GCACACATGTCAGTGTTCAACTACCTACAGTTACATTTTTCAGGGTCTGA
TAACCTCTTCTCAGACACCAGGTGTGCACAAGGAAGCATGAGGGCAATGT
CCCCAATGTAAAATATATTGAGCAAGTCAGTTCAGTCGGTCAACAGGGTC
TCAGGGGCAGGGGTGAGGATTGAAAAGGAATAGACCATTAGACTAATATC
CCAACATGACTTCAGCCAGTGCTGAGGCTGAATTGGCTTTATTTTTCCCC
AGCAGCTTTTATACCTTTTTAGGAACTATCTAAAATAAGGTCAGTTTCTT
AAATCAAATTTAATTGTTTTATTAATGGCATAAAACAAAAATTTCCTTCC
GTGTATAATCCCCCAATGTCAATATTAAATGGTCCCATTTTTTTGGTTCC
CGGTTTCTTTTTTGTATGTTCTTAATTTAATTTATTCTCCTTTTCCTACT
CTTGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_h15.g1 MSMg01no146_h15.g1 CHROMAT_FILE:
MSMg01no146_h15.g1 PHD_FILE: MSMg01no146_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:18 2005
         (675 letters)



>mm_chr3_72325378_72326453
          Length = 1076

 Score = 1199 bits (620), Expect = 0.0
 Identities = 663/682 (97%), Gaps = 11/682 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagaatgctgatccataggataatcaaaagggaacctggtataaataactgaattgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ctcagaatgctgatccataggataatcaaaagggaacctggtataaataactgaattgat 635

                                                                       
Query: 61  aagtaaataaaaaaaatagacttttagtctgcatgaatgataagtgttagtctgcatga- 119
           |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 634 aagtaaat-aaaaaaatagacttttagtctgcatgaatgatgagtgttagtctgcatgaa 576

                                                                       
Query: 120 --atgaacttacagagcaagatggcaattcctagaattttctctaaagagctgagctgtc 177
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgatgaacttacagagcaagatggcaattcctagaattttctctaaagagctgagctgtc 516

                                                                       
Query: 178 tgaggatgactagagagtgaaaacagctcttcaataatattttctaacaggatttctgac 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgaggatgactagagagtgaaaacagctcttcaataatattttctaacaggatttctgac 456

                                                                       
Query: 238 ttcgtcagaaaatccaataattttttattttt----gcttttctgactttgatcagaaaa 293
           || |||||||||||||||||||||   ||| |    ||||||||||||||||||||||||
Sbjct: 455 ttggtcagaaaatccaataatttt---tttataacagcttttctgactttgatcagaaaa 399

                                                                       
Query: 294 ctcaggagctatctaatagcttttacaatttttattagcagagagagagctgttccaact 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctcaggagctatctaatagcttttacaatttttattagcagagagagagctgttccaact 339

                                                                       
Query: 354 agagagtttttagaatagcaaggaaaagctgtctagaaaggaatagaacacacagagaga 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agagagtttttagaatagcaaggaaaagctgtctagaaaggaatagaacacacagagaga 279

                                                                       
Query: 414 gaaatctggaaggctatctcagaaaaaccaatgccaccgtgagcttgaatccacaacttg 473
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 278 gaaatctggaaggctttctcagaaaaaccaatgccaccgtgagcttgaaaccacaacttg 219

                                                                       
Query: 474 tcttggagatatttcttttccctgcttacagccccccctttcttagatcccccctccaag 533
           ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 218 tcttggagatatttcttttccctgcttacagtcccccctttctcagatcccccctccaag 159

                                                                       
Query: 534 ccaagggtggtccttggcacacaaggttaaggaagagctctgcctacttttgcagatgac 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ccaagggtggtccttggcacacaaggttaaggaagagctctgcctacttttgcagatgac 99

                                                                       
Query: 594 tcaattcattcccagcgcacacatgtcagtgttcaactacctacagttacatttttcagg 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  tcaattcattcccagcgcacacatgtcagtgttcaactacctacagttacatttttcagg 39

                                 
Query: 654 gtctgataacctcttctcagac 675
            |||||||||||||||||||||
Sbjct: 38  atctgataacctcttctcagac 17


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space:   708890
Effective search space used:   708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)