BAC Information

Click to search

BAC

Clone NameMSMg01-146K05
Chromosome3 (Build37)
Map Location 10,289,637 - 10,290,230
singlet/doubletsinglet
Overlap gene1700008G05Rik
Upstream geneZfp704, Pag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4
Downstream geneImpa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564, LOC383826, EG667978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146K05.T7 (MSMg01no146_k05.b1)MSMg01-146K05.TJ (MSMg01no146_k05.g1)
ACCAG350121AG350122
length1,2401,247
length of high quality
(start - end)
729 (127 - 855)609 (130 - 738)
definitionCHROMAT_FILE: MSMg01no146_k05.b1 PHD_FILE: MSMg01no146_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:39 2005CHROMAT_FILE: MSMg01no146_k05.g1 PHD_FILE: MSMg01no146_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGATTTCTTTGNNNTACAGTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTACCAGAAAATCCGTACCGTTAAAGAACACCTGAAGCA
AAGTGGTTTGATACAAAATTCTTTAGAAGAAATCATTAGCCCCCCTCTAC
ACAAGTGATAAATGGGCTGAGAGAGAAGTTAGAGAAACAGTATACTTCAC
AATAGCCACAAATAACATAAAATAGCTTGGAGTAACTCCAAGCAAGTAAA
AGCCCTTCAAGTCTCTGAAGAAAGAAATGGAGGAAGATCTCTGTTTAAGG
GTTTCCATTTTTGTGCAGAGACATCATAACCAAGGCAACTCTTATAAAAG
ACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAAGTCCGTTATCA
TCAAGGTGGGAATATGACAGCTTTCAGGCAGGCATGGTGCTGGAGGAGAT
GAGAGTTCTGCATCTTGATCTGTCTGCAGACAGGGAAAAGGCTGACTCTT
CCGAACTGGGCAGAACTTCAGAGCCCACCCCCACACTGAGAGCCTTCCTC
TAACAATGCTACACTTCCTAACAGTCACACTCCTATGGGCCAAACATATT
CAAACCACCACAATATCAGAAGGTGGAAAGATCTCCCTTGCTCATGGATC
AGTAGGATTAATAGAATGGAAATGGTCATCTGACCAAAAGCAATTTACAG
ATTAAATGCAGTCCCCATCATAATTCCAACTCATTTCTTCACAGATCTTA
AGAAAGCAATTCTCAGCTGTTCGGTGTGAATTCAGGCCTGCCGGTGTGAA
GTGAAACAGTCCTCTAAGTGGGGAGGGAAGATGATTATAGGAAAGATAGA
AAGAAGACTCGGAGACCAACATTAGAAACTGGGAGGGTTGTCCAGTGAAT
ACTGTGGTAGCTCTGAATTTAATTTTTAGGCTTTTTGTACTTTACAGTGT
CGTAAGAAATTCCCAAGCTAGAAGAAACAGCTAGTTGACATACTTTTGAT
ATCTGTTCCCATCAGAGGCCTTCATGTTTCTTCCCCCAGAATTAAAAAAA
ATTTAGCCCCTCCCCTGAGGTTCCCATGGGGACCCTCCCCTATTTTTAAT
GTTATTGGGCCTGTAATATTGCCTGGGAAACCCGGACTCATCTGAGTTTT
GCCTGGAAGGAAGGTTCCTCCTAAACAGAAAAAAAAATTCTCTGGAACCC
GGTTTTTTTGGATAATACATATAAATCCGTGCTGTTTTAT
CCCATTTTTTTTTATAACAGGTGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTATAAACTCTCGTAGACACC
TCTTCTGTTTAGGAGATTCCCTTTTCAGATATCTTTTTTCCCCCTCTCCC
TTTATTGGACATTGTTGTGCCTTCTGAGGTGGACAAGATACCACTAGCTG
TCTTGCAAATGTTTCAAGACAGCTAATGTTTATACTTCAAGTATTTGGGT
TCTTGTTTGGTTTCCCAGATGGAAGGAAATTAAGACTCAAACCTCCTTCT
CATCACTTGGCTTCCTCTTCTCTTGGTTATTCTCACAAGTCTCCTCTTGA
TTTGAACTAAACAGCTCCGCAGACAGAAGTCAAGGCACGGAGTAACGTGC
TGCTGTAATGACGGGTTACCGCTCTGCTCTCAGGAGGAAGCTTTAAACCA
CCGGTTTCTGTCTCTTCTTGGTTGGCTATGCTAATTAAAAGATAAGATCA
TAGCTTTTCATTTTGTTTTCTATAGGAAGTCTTTTTCTTAATCAGCAGGA
AGATAGAAAATGAAGCACTTATTATAAGTAAAAAGTTATGTCCTAGAATT
ATTTAACTTGGTCTTTAAATCCTGAGTAGGCTCGAGCAGATGAATACCCT
GGGCACCCCGTGGCCTTGGGCCTCCATGGGCAGGAGGAGCACATTGTTAA
GGGGAGTCTGAGAAGCCAGTTGGGTCAGGAGCTACGGGAGCACAGAAGGA
TGAGGTTGCACAAGTTTCCCTCTGGTCCAAATGGACACAAGAATTGCACA
GGCATTTTTATTTCTTGGTTAATGGAAAATTGGTTTCCATGGCAGGCTCC
TTTTCTATGGTGTCTTGGTTTCTGAACCGATTAGAAAGTTAAAGTCTTCC
CCAGAAATAGTGTTGTGTTTGTTTTTTATATACATTCTTCTCTTTCTTTT
CTGTCTTTAATTATTTCTTTTCCTCTTTTTCTAATTCTTCTCTTTCTTTT
TTTATATTTATTCTTATATTATTTTTTTATTTTATTCTTTCCATTCTCCC
TATTTTTTCTTTTCTTTCTCTCTCTTTTCTTCTTTTCACTATTTTAATCT
CTTTTCACTTATTTTTATTTTATCTACTTTATTTTTATATTCCTTCTTCC
ACTTATGCTTTTGTACTATTTTTATTCTCCATCTTACTTCTTCTTTATTC
TTTTTTATTTGCTTTCCTCCTATTTCTTTTTTCTATCTATTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_k05.g1 MSMg01no146_k05.g1 CHROMAT_FILE:
MSMg01no146_k05.g1 PHD_FILE: MSMg01no146_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:39 2005
         (609 letters)



>mm_chr3_10289423_10290434
          Length = 1012

 Score = 1073 bits (555), Expect = 0.0
 Identities = 584/595 (98%), Gaps = 5/595 (0%)
 Strand = Plus / Plus

                                                                       
Query: 15  ctctccctttattggacattgttgtgccttctgaggtggacaagataccactagctgtct 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ctctccctttattggacattgttgtgccttctgaggtggacaagataccactagctgtct 274

                                                                       
Query: 75  tgcaaatgtttcaagacagctaatgtttatacttcaagtatttgggttcttgtttggttt 134
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 275 tgcaaatgtttcaagacagctaatgtttatacttcaagtatttgggctcttgtttggttt 334

                                                                       
Query: 135 cccagatggaaggaaattaagactcaaacctccttctcatcacttggcttcctcttctct 194
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 335 cccagatggaaggaaattaagactcaaacctccttctcatcactgggcttcctcttctct 394

                                                                       
Query: 195 tggttattctcacaagtctcctc---ttgatttgaactaaacagctccgcagacagaagt 251
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 395 tggttattctcacaagtctcctcctcttgatttgaactaaacagctccgcagacagaagt 454

                                                                       
Query: 252 caaggcacggagtaac-gtgctgctgtaatgacgggttaccgctctgctctcaggaggaa 310
           |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 455 caaggcacggagta-cagtgctgctgtaaggacgggttaccgctctgctctcaggaggaa 513

                                                                       
Query: 311 gctttaaaccaccggtttctgtctcttcttggttggctatgctaattaaaagataagatc 370
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 514 gctttaaaccaccggtttctgtctcttcttggttggatatgctaattaaaagataagatc 573

                                                                       
Query: 371 atagcttttcattttgttttctataggaagtctttttcttaatcagcaggaagatagaaa 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 atagcttttcattttgttttctataggaagtctttttcttaatcagcaggaagatagaaa 633

                                                                       
Query: 431 atgaagcacttattataagtaaaaagttatgtcctagaattatttaacttggtctttaaa 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 atgaagcacttattataagtaaaaagttatgtcctagaattatttaacttggtctttaaa 693

                                                                       
Query: 491 tcctgagtaggctcgagcagatgaataccctgggcaccccgtggccttgggcctccatgg 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tcctgagtaggctcgagcagatgaataccctgggcaccccgtggccttgggcctccatgg 753

                                                                  
Query: 551 gcaggaggagcacattgttaaggggagtctgagaagccagttgggtcaggagcta 605
           ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 754 gcaggaggagcacattggtaaggggagtctgagaagccagttaggtcaggagcta 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1012
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1002
Effective search space:   600198
Effective search space used:   600198
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)