BAC Information

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BAC

Clone NameMSMg01-146M02
Chromosome3 (Build37)
Map Location 99,036,467 - 99,036,910
singlet/doubletsinglet
Overlap genenone
Upstream geneReg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2
Downstream geneTbx15, M6pr-ps, Spag17, LOC623045, Wdr3, Gdap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146M02.T7 (MSMg01no146_m02.b1)MSMg01-146M02.TJ (MSMg01no146_m02.g1)
ACCAG350208AG350209
length1,2181,339
length of high quality
(start - end)
639 (85 - 723)---
definitionCHROMAT_FILE: MSMg01no146_m02.b1 PHD_FILE: MSMg01no146_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:54 2005CHROMAT_FILE: MSMg01no146_m02.g1 PHD_FILE: MSMg01no146_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCAATCTGNNNNNTGCATTGGGCGCTAAGACTACTAAGGGAGAGGATCCG
CGGAATTCCCAAAGACCTGGGTATCCATTTCAATTCAATTTTTTTTAAAA
TCCTTCTAATGTATATCCGTTTAAAGACACACACCCCCACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACGAAAGA
CAGGGTTTCTCTGTGTAGCCTTGGCTGACTGGCCTGGAACTCAGAGATCC
TCCTGCCTTTGCCTCCTGAGTGCTGAGATAAAAGGCATGCCCTGGCACCA
CCACCTGATTCATTTCTTGGGCTATTTCTGTGGTTGTTTTTCAAGAGAAG
GCTTCTTTTTCTAGCCCTAGCTGTCCTAGAACTCGGTCTGTAGACCAGGC
TGGTCTTAAACTCACAGAAATCCACCTGCCTCTGCCTCCCTAGTGCTGGG
ATTAAAGGCATGTGCCACCACTGTCCAGCAGAGTGAGTTCTTCAAAGCAG
GATTAAGTATGCTGGATAGTGGGATGTTGATTTTCTTTAATGAGGTGAAG
TTTTTCTTCCCCCACTAAACTGTAATATAGAGATCAAAGACTCAATGGTC
ATACTGTCATTATAAACCACATTGTACATATCGGACAATTGGTCACATTG
GAAAACCATAAAGATAAGACTCAGCTTAAAGTGGGTCATACTGTTAGATG
GTAGGGGCCACACCTTTAATCTCAGCACTCAGGAGGCAGAGGCAGGCAGA
TCTTCAGAGCTCAAAGCTAACCTGTTTTACAGAACAAGCTCCTGGATAGT
CAGGTCTACACAGAAAAAACCTGTGTTTCTTCTGACCACAACCATTTCCT
TCCTGCTCTGATTCAAGTATGCCCTTGTCTCTATCTTAAGGCCCTTTGAA
TTTGCTGTTGCCTCTGGTTGTCTGGTTTTTCCTCCAAAAATTTCAAATGT
TCTCTTCTTTAGAACCTTTTTATCTCCCCCCATTACATTTTTAAAACATA
TTTTTTACAGTTCTATCCTCATATCATTTTTTTCCCTCTTTTTTTAAATT
CCTAAAATCACATTGTTTTTCCTCTCTATTAAAGTTCCTATATCTGTGTG
TATATGTTTTTCCCTTTCTCATTTTTCTTCCCATTAATATCTTATTTACT
ATATCTTTTCTACTCTTCCTTTTAATAATATCTTTTTAGTATTATTTCTC
TCTTATTCTTAATAATGT
NTTTTCGACTAGGTAGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTTATAAACCCCCCAGATATANTTAATCTAANAG
AACAGACCCTTGGAAAAATCCCTTNCCCCCCCTTGGTATAGGAGATAAAT
TTTTGAATTAAATATTAATGTTATAGTGTTTAATATTATGAATTAATAAT
TGTAAGTTTGTGATATTAATAAGTTTTTATATGTTATAGAATATTGTGAT
ATGTTTTTTTAATATTTATTTATTTGAAATATTGTTAGTATTATATATAT
ATTGTTATATAATTATATTATTATTTTTTTTATATAGTTTATTGATTTTA
TTTGATTTTTTAATGTATTATTTTTTAATTATTTGAAAATATTTTTTTTT
TTTTTAATATTTATTTTTTTATTTATTATATTTATAATAATTACTCCTTT
TTTATTTTATTTAATTTTTATTTATTTATTTTTTTTTTTATTTTTTTTTT
ATTATATATTTTTTTTTTTTTTTATTATATTTTATTTATTATATTTAATT
AATTTTTATATATTTATTATATATTTATTTATTTTTATAATTTTTTTTAT
TATTATATTATAATTTTTTTATTATTATTTTTTATTTTTTTTTATTTTTT
ATTAATTTTTTTTTTTTATTATTTATTTATTATTTTTTATTTTTTTATAT
ATTTTTTATATTTTTATTTATTTAATTATTTTTTTTTATAATTTTAATTT
ATTTTATTTTTTATTATTATATTTTTTTTTTTATTTTATTTTATTTATTT
ATATTATTATTAATTTTTTTATATATATTTTTATATTTTTTTTTATTTTT
TTTTTTTATAATTATATATTTTTATTTTTTATTTTTTTTTTTATTATATT
ATTAATTATGTTTATTTTTTTTTTTTTATTATTATTTTATTTTTTATTAT
ATTTTATTTTTATTATTTTTTTATATATTTTTTTATTTTTTTTTATGATA
TTATTTTAATTATTTTAATTTAATTTTTAAATTTTTTTATATTTTTTTTT
TTTAAATTATATTTAATTATTTTTATATGTATTTTTATTTTTATTATATT
ATTATTTTTTTTTTTTTTAATATTTATTAATATTTTTATTTATTTAATTT
TTATTTTTAATTTTTTATATATTATTTATTTATTTTTTTTATTATTTAAT
TAGATTATTTATATATTTGTATTATTTTATTTATATTTAATATTTAATAT
ATTAATTATAATATATATTTTTATAATTTGTTATTTTTATTTTATATTTT
TAATTATAATTATATAATTATATAATAATTTTATTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_m02.b1 MSMg01no146_m02.b1 CHROMAT_FILE:
MSMg01no146_m02.b1 PHD_FILE: MSMg01no146_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:54 2005
         (639 letters)



>mm_chr3_99035872_99036910
          Length = 1039

 Score =  828 bits (428), Expect = 0.0
 Identities = 440/444 (99%)
 Strand = Plus / Minus

                                                                        
Query: 196  aaaaggcatgccctggcaccaccacctgattcatttcttgggctatttctgtggttgttt 255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 aaaaggcatgccctggcaccaccacctgattcatttcttgggctatttctgtggttgttt 980

                                                                        
Query: 256  ttcaagagaaggcttctttttctagccctagctgtcctagaactcggtctgtagaccagg 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  ttcaagagaaggcttctttttctagccctagctgtcctagaactcggtctgtagaccagg 920

                                                                        
Query: 316  ctggtcttaaactcacagaaatccacctgcctctgcctccctagtgctgggattaaaggc 375
            |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919  ctggcctcaaactcacagaaatccacctgcctctgcctccctagtgctgggattaaaggc 860

                                                                        
Query: 376  atgtgccaccactgtccagcagagtgagttcttcaaagcaggattaagtatgctggatag 435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  atgtgccaccactgtccagcagagtgagttcttcaaagcaggattaagtatgctggatag 800

                                                                        
Query: 436  tgggatgttgattttctttaatgaggtgaagtttttcttcccccactaaactgtaatata 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799  tgggatgttgattttctttaatgaggtgaagtttttcttcccccactaaactgtaatata 740

                                                                        
Query: 496  gagatcaaagactcaatggtcatactgtcattataaaccacattgtacatatcggacaat 555
            |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 739  gagatcaaagactcaatggtcatactgtcattataaacaacattgtacatattggacaat 680

                                                                        
Query: 556  tggtcacattggaaaaccataaagataagactcagcttaaagtgggtcatactgttagat 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679  tggtcacattggaaaaccataaagataagactcagcttaaagtgggtcatactgttagat 620

                                    
Query: 616  ggtaggggccacacctttaatctc 639
            ||||||||||||||||||||||||
Sbjct: 619  ggtaggggccacacctttaatctc 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)