BAC Information

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BAC

Clone NameMSMg01-147F20
Chromosome3 (Build37)
Map Location 103,955,080 - 104,110,247
singlet/doubletdoublet
Overlap geneMagi3
Upstream geneDennd2c, Bcas2, Trim33, Syt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1
Downstream geneEG433634, LOC668622, Lrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147F20.T7 (MSMg01no147_f20.b1)MSMg01-147F20.TJ (MSMg01no147_f20.g1)
ACCAG350655AG350656
length736717
length of high quality
(start - end)		688 (49 - 736)636 (82 - 717)
definitionCHROMAT_FILE: MSMg01no147_f20.b1 PHD_FILE: MSMg01no147_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:56 2005CHROMAT_FILE: MSMg01no147_f20.g1 PHD_FILE: MSMg01no147_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,955,080 - 103,955,761)(104,109,782 - 104,110,247)
sequence
CAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATC
CGCGGAATTCATCTTATTTTCCAAAAAGAAAGCAAGAAAACAAAGCAAAC
TCTCTAAAAATTTTTTTCTAACATTTTGAAAGTTCAAACTCCTCCTTCCA
GCCCACGAGTTTCTCAGTGATAAAACCTTTGGTTGACTTTCCAATGTTAT
CACTTATTATTCTCCTTCTCTCATCATTTTGGCATATTGGTCTCTTTTAT
GTTCTTGAATACAGAAAGTTTACTATCATGACCTTGTAGTTCTGTAGAAA
ATGTCAAGATAACAGGTTCTCTTAAAATGTCCACTTCACAGAAGCTTTGC
AATTTTATGAGGTCCCATTTCTCAATCTTACAGCACAAGTCATTGCTGTT
CTATTCAAGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCAC
TTTGTCCACTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCAC
ATTTTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAAT
GCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGG
TCTACTTGTCTGTCGCTATACCAGTACCATGCAGTT

NNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAAGAGAGCAGAGAGCG
ACAGATAAGAGCTGTTTGTGCAGAGATGGTGCCTGAGAAGGTTCTGGACC
TTCAGGATAGAAGTGCGTAAGTTGTACTGAGGGTGGACGATGATTCAGCC
TGAGTGCCTTTGGGATGGGGCCCCCTTTAATTTCCTCACCCTGGGCTTTG
CTTTAGCCCTCCTGGCCTCTCCACTAATCCCAGGACAATGCACACCTCCT
CCTACTCAGAAGCATTCAACTCGCTCTTCCTCCGTGGGAATGCTTCTTGT
CAGGCAAAACCAACAGCTCTCATCTTAAAGGGAACGGGAGGTAGTTTACT
CTGAAGCATGTTAGGAGGGACTCTGGCCCAGACACTGGATTTATGCTCTC
CCACATTACATGTTCTGATGTGGAAGCAGTTTCATGAAGTTTTTATAGCT
GTTCAGAAGGAAGAAAGCCATAGATCATAGGCAAGTGTAAAATACGTTGG
TGGGTACATCCAAGAGATGGGTACATCTGAGAGATGGGTACATCCGAGAG
ATGGGTACATCTGAGAGGTGGGTATATCTGAGAGATGGCTACATCTGAGA
GGTGGCTACATCTGAGAGGTGGCTACATCTGAGAGATGGGTACATCCGAG
AGATGGGTACATCTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_f20.b1 MSMg01no147_f20.b1 CHROMAT_FILE:
MSMg01no147_f20.b1 PHD_FILE: MSMg01no147_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:56 2005
         (688 letters)



>mm_chr3_103954874_103955961
          Length = 1088

 Score = 1303 bits (674), Expect = 0.0
 Identities = 680/682 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcatcttattttccaaaaagaaagcaagaaaacaaagcaaactctctaaaaatttt 66
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcatcttattttggaaaaagaaagcaagaaaacaaagcaaactctctaaaaatttt 266

                                                                       
Query: 67  tttctaacattttgaaagttcaaactcctccttccagcccacgagtttctcagtgataaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tttctaacattttgaaagttcaaactcctccttccagcccacgagtttctcagtgataaa 326

                                                                       
Query: 127 acctttggttgactttccaatgttatcacttattattctccttctctcatcattttggca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acctttggttgactttccaatgttatcacttattattctccttctctcatcattttggca 386

                                                                       
Query: 187 tattggtctcttttatgttcttgaatacagaaagtttactatcatgaccttgtagttctg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tattggtctcttttatgttcttgaatacagaaagtttactatcatgaccttgtagttctg 446

                                                                       
Query: 247 tagaaaatgtcaagataacaggttctcttaaaatgtccacttcacagaagctttgcaatt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tagaaaatgtcaagataacaggttctcttaaaatgtccacttcacagaagctttgcaatt 506

                                                                       
Query: 307 ttatgaggtcccatttctcaatcttacagcacaagtcattgctgttctattcaagaattt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttatgaggtcccatttctcaatcttacagcacaagtcattgctgttctattcaagaattt 566

                                                                       
Query: 367 ttcccctgtgcccatatcttcgaggcttttccccactttgtccactataagtttcagtgt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttcccctgtgcccatatcttcgaggcttttccccactttgtccactataagtttcagtgt 626

                                                                       
Query: 427 ctctggttttatgtggagttccttgatccacttagatttgaccttagtacaaggagatag 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctctggttttatgtggagttccttgatccacttagatttgaccttagtacaaggagatag 686

                                                                       
Query: 487 gaatggatcaattcacatttttctacatgataaccgccagttgtgccagcaccatttgtt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaatggatcaattcacatttttctacatgataaccgccagttgtgccagcaccatttgtt 746

                                                                       
Query: 547 gaaaatgctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtgacc 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaaaatgctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtgacc 806

                                                                       
Query: 607 ataggtgtgtgggttcatttctgggtcttcaattctattccattggtctacttgtctgtc 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ataggtgtgtgggttcatttctgggtcttcaattctattccattggtctacttgtctgtc 866

                                 
Query: 667 gctataccagtaccatgcagtt 688
           ||||||||||||||||||||||
Sbjct: 867 gctataccagtaccatgcagtt 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no147_f20.g1 MSMg01no147_f20.g1 CHROMAT_FILE:
MSMg01no147_f20.g1 PHD_FILE: MSMg01no147_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:56 2005
         (636 letters)



>mm_chr3_104109782_104110817
          Length = 1036

 Score =  901 bits (466), Expect = 0.0
 Identities = 466/466 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaagagagcagagagcgacagataagagctgtttgtgcagagatggtgcctgagaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctgaagagagcagagagcgacagataagagctgtttgtgcagagatggtgcctgagaagg 407

                                                                       
Query: 61  ttctggaccttcaggatagaagtgcgtaagttgtactgagggtggacgatgattcagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttctggaccttcaggatagaagtgcgtaagttgtactgagggtggacgatgattcagcct 347

                                                                       
Query: 121 gagtgcctttgggatggggccccctttaatttcctcaccctgggctttgctttagccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gagtgcctttgggatggggccccctttaatttcctcaccctgggctttgctttagccctc 287

                                                                       
Query: 181 ctggcctctccactaatcccaggacaatgcacacctcctcctactcagaagcattcaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctggcctctccactaatcccaggacaatgcacacctcctcctactcagaagcattcaact 227

                                                                       
Query: 241 cgctcttcctccgtgggaatgcttcttgtcaggcaaaaccaacagctctcatcttaaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cgctcttcctccgtgggaatgcttcttgtcaggcaaaaccaacagctctcatcttaaagg 167

                                                                       
Query: 301 gaacgggaggtagtttactctgaagcatgttaggagggactctggcccagacactggatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gaacgggaggtagtttactctgaagcatgttaggagggactctggcccagacactggatt 107

                                                                       
Query: 361 tatgctctcccacattacatgttctgatgtggaagcagtttcatgaagtttttatagctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tatgctctcccacattacatgttctgatgtggaagcagtttcatgaagtttttatagctg 47

                                                         
Query: 421 ttcagaaggaagaaagccatagatcataggcaagtgtaaaatacgt 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  ttcagaaggaagaaagccatagatcataggcaagtgtaaaatacgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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