Query= MSMg01no147_h20.b1 MSMg01no147_h20.b1 CHROMAT_FILE:
MSMg01no147_h20.b1 PHD_FILE: MSMg01no147_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:05 2005
(671 letters)
>mm_chr3_147995746_147996816
Length = 1071
Score = 1266 bits (655), Expect = 0.0
Identities = 664/667 (99%)
Strand = Plus / Minus
Query: 5 gaattctttctggaaatggtctcagggacacactcacagacatgtccctggggcgattct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 gaattctttctggaaatggtctcagggacacactcacagacatgtccctggggcgattct 843
Query: 65 aaatctagtcagaatctaggcagtgtcctagagatcctataatgtgactattttgcgtgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 aaatctagtcagaatctaggcagtgtcctagagatcctataatgtgactattttgcgtgc 783
Query: 125 ttcttgaagatatacgaacctgaatgtgtggactgtgtgtccatagagtctttcttccta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ttcttgaagatatacgaacctgaatgtgtggactgtgtgtccatagagtctttcttccta 723
Query: 185 taagctttcaattcagtccatctttgtcccagtgcctgctgtgacctacactgcagctgt 244
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 722 taagctttcaattcagtccatctttgttccagtgcctgctgtgacctatactgcagctgt 663
Query: 245 caacataaacgttggaagaaatagaaagaggcatttgtgtaacctctgtagtattcaaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 caacataaacgttggaagaaatagaaagaggcatttgtgtaacctctgtagtattcaaag 603
Query: 305 cactcttactgataagagcgtctctttggagtttattacaacctcatgtggtccacaagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cactcttactgataagagcgtctctttggagtttattacaacctcatgtggtccacaagg 543
Query: 365 caaaaactatttcccttgtcttgagggagaagacactcttgggaccatatttagaaagct 424
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 542 caaaaactatttcccttgtcttgagggagaagacactcttgggaccatacttagaaagct 483
Query: 425 ttgcaataactttgccataattttgccaaaagcactgagtctgttttctttcttctaatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttgcaataactttgccataattttgccaaaagcactgagtctgttttctttcttctaatc 423
Query: 485 atcctttatacctgtcagttaggaaggatgggatacaaggcaaataataatctttgttgt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atcctttatacctgtcagttaggaaggatgggatacaaggcaaataataatctttgttgt 363
Query: 545 atcaatttctatgattgaatgtgctaagaactaggggtctagttagtttggctttctgta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atcaatttctatgattgaatgtgctaagaactaggggtctagttagtttggctttctgta 303
Query: 605 gacagtttttccaaaagagtgaaatgcatattaaaaattataaatttttaccacatttct 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gacagtttttccaaaagagtgaaatgcatattaaaaattataaatttttaccacatttct 243
Query: 665 tcattat 671
|||||||
Sbjct: 242 tcattat 236
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_h20.g1 MSMg01no147_h20.g1 CHROMAT_FILE:
MSMg01no147_h20.g1 PHD_FILE: MSMg01no147_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:06 2005
(645 letters)
>mm_chr3_147843104_147844147
Length = 1044
Score = 1191 bits (616), Expect = 0.0
Identities = 637/644 (98%), Gaps = 1/644 (0%)
Strand = Plus / Plus
Query: 1 tttaccacatagctagaacatgattgagagagatttttctccaattctatgggttttatt 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaccacgtagctagaacatgattgagagagatttttctccaattctatgggttttatt 260
Query: 61 ttcaacctttttatccttgagttttgaaggttaaaattagttaattgtggaaatacaatt 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ttcaac-tttttatccttgagttttgaaggttaaaattagttaattgtggaaatataatt 319
Query: 121 tacctattgttctcttcttgttgttcttgttgttgttgttttctcttccttcttcttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacctattgttctcttcttgttgttcttgttgttgttgttttctcttccttcttcttctc 379
Query: 181 aatctcttctttcttcttcttctcttttttctcttttcctacccgtccttccttctcctt 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 aatctcttctttcttcttcttctcttttttctcttttcctacccctccttccttctcctt 439
Query: 241 ttttctgcttctccttccctaaaagagaaatatttttcatctttctcttcctcctgcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttttctgcttctccttccctaaaagagaaatatttttcatctttctcttcctcctgcttt 499
Query: 301 cccttattatccctgtgcttctccctgcccccgcccgactcctccttcttcttttacttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cccttattatccctgtgcttctccctgcccccgcccgactcctccttcttcttttacttg 559
Query: 361 tcctcctcctcctcttcttttcttttttattgatagcatttctagtttttatatttggaa 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 tcctcctcctcctcttcttttcttttttattgattgcatttctagtttttatatttggaa 619
Query: 421 accactgtccatgtcatgaaaatttactctttaattttactctaggaacatgtagttgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 accactgtccatgtcatgaaaatttactctttaattttactctaggaacatgtagttgtg 679
Query: 481 gctgtatcattagatctataactccttctaagttgattttatgcatggtctaatgagaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gctgtatcattagatctataactccttctaagttgattttatgcatggtctaatgagaag 739
Query: 541 gcaaggtctatgtatatttagtttaggatattaaaatatccagtcatcttgacattgaaa 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtaaggtctatgtatatttagtttaggatattaaaatatccagtcatcttgacattgaaa 799
Query: 601 tgttgtcttacataatagctgataataatgtaattatttatttg 644
|||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 800 tgttgtcttacataattgctgataataatgtaattatttatttg 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space: 656590
Effective search space used: 656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
