BAC Information

Click to search

BAC

Clone NameMSMg01-147P12
Chromosome3 (Build37)
Map Location 88,020,772 - 88,021,406
singlet/doubletsinglet
Overlap geneLOC100042277
Upstream geneMsr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271
Downstream geneRhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147P12.T7 (MSMg01no147_p12.b1)MSMg01-147P12.TJ (MSMg01no147_p12.g1)
ACCAG351103AG351104
length732732
length of high quality
(start - end)
639 (53 - 691)651 (82 - 732)
definitionCHROMAT_FILE: MSMg01no147_p12.b1 PHD_FILE: MSMg01no147_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:43 2005CHROMAT_FILE: MSMg01no147_p12.g1 PHD_FILE: MSMg01no147_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTGATCCTTCGTCCTCTACTTTGCAACTGCTCAGATTA
TAGGCCTGTGCTATGATAGAGGGCTGTGTAGCCCTGGCTGTCCTGGAATT
TACAGTGAAGACACTATACAGGAAACATTAAAGATGGTAATGATAAGGAA
GCTTATTTTATTGATGCCCCTCCTCTGCCCATGCAAATTCCCAATAACAG
AGAGGCTTCCCTTCTTTCTACTTTCCCAATTGGCTCCCTTGGGGTGGGGA
GTGTCACTTTCTCCAAGACAGAGTAAATGGAAGGAGCTTTGAGTGTCAAG
CCAGTGAGTAATGTCAGCTGCTCACTTGTGCCTGTGCAACATGGGATCAC
ATGGCATCTCTCAAGCAGCGGACACACAAAACAGGCTGTGGCCAGACCAT
TAGTTCCAGCCTAGACCCAGCCTCTTTTCTCCTTGACTTAAGCTTCATCC
CCACCACCCCTACCAAAACAAAACAAATTCCAAGCTTCTGGAATTTAAGA
GGCCACTCGACTCTCCCTCCCCTAACTGCTAAAGAAGACACGCACAGGCA
ATAGATTCCCTGAAGTCCCAGAATTTGAATTTGGATTCTCTAATATTTCC
CCCCATGTAATACAAAATTGAATCATTATCTTCTAACTGTAAAATCAGGT
CCCGGGAGGAAATTTTAAATTTATAAGAACCA
CCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGA
ACGGTGGTAATGAAGTGTTCCCGTAACACAGACTGTTGAGAAGGATTCAA
CTGCGTGAATTCAGAACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTAT
AGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACA
GTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGTCTT
GAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAAT
AGCTTTACAAGGTATGTTTGGCCTTGAACTTTTTCTAGTGTTAGGAGCCC
TTTTGTTCCTTTTCACATGTTACCAAGCGGTTAAGGCAGGGCTGAAAATT
CTGGATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGT
AGGAGCAAAGAGGAAATATGGTACACAAAATAAGTATACAGGCCTTTCCA
CGGGTCTTGAACCTGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGA
GAGATTAGAAGGAAGGAAAAGAAAAAAGATCAATTAGCGGAGGTCTCTAG
GAGAAGGAGCCTATACTCATCACTAGGTGAGCTCAAGGAGCCAGTTCTTA
ATAGTTCTGAATCAGATGAAAAGGCTATTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_p12.b1 MSMg01no147_p12.b1 CHROMAT_FILE:
MSMg01no147_p12.b1 PHD_FILE: MSMg01no147_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:43 2005
         (639 letters)



>mm_chr3_88020462_88021500
          Length = 1039

 Score = 1181 bits (611), Expect = 0.0
 Identities = 629/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgatccttcgtcctctactttgcaactgctcagattataggcctgtgctatga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 gaattcttgatccttcgtcctctactttgcaactgctcagattataggcctgtgctatga 886

                                                                       
Query: 65  tagagggctgtgtagccctggctgtcctggaatttacagtgaagacactatacaggaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tagagggctgtgtagccctggctgtcctggaatttacagtgaagacactatacaggaaac 826

                                                                       
Query: 125 attaaagatggtaatgataaggaagcttattttattgatgcccctcctctgcccatgcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 attaaagatggtaatgataaggaagcttattttattgatgcccctcctctgcccatgcaa 766

                                                                       
Query: 185 attcccaataacagagaggcttcccttctttctactttcccaattggctcccttggggtg 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 765 attcccaataacagagaggcttcccttctttctactttcccagttggctcccttggggtg 706

                                                                       
Query: 245 gggagtgtcactttctccaagacagagtaaatggaaggagctttgagtgtcaagccagtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gggagtgtcactttctccaagacagagtaaatggaaggagctttgagtgtcaagccagtg 646

                                                                       
Query: 305 agtaatgtcagctgctcacttgtgcctgtgcaacatgggatcacatggcatctctcaagc 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 645 agtaatgtcagctgctcacttgtgcctgtgtaacatgggatcacatggcatctctcaagc 586

                                                                       
Query: 365 agcggacacacaaaacaggctgtggccagaccattagttccagcctagacccagcctctt 424
           |||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agcggaaaaagaaaacaggctgtggccagaccattagttccagcctagacccagcctctt 526

                                                                       
Query: 425 ttctccttgacttaagcttcatccccaccacccctaccaaaacaaaacaaattccaagct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttctccttgacttaagcttcatccccaccacccctaccaaaacaaaacaaattccaagct 466

                                                                       
Query: 485 tctggaatttaagaggccactcgactctccctcccctaactgctaaagaagacacgcaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 465 tctggaatttaagaggccactcgactctccctcccctaactgctaaagaagacacacaca 406

                                                                       
Query: 545 ggcaatagattccctgaagtcccagaatttgaatttggattctctaatatttccccccat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggcaatagattccctgaagtcccagaatttgaatttggattctctaatatttccccccat 346

                                              
Query: 605 gtaatacaaaattgaatcattatcttctaactgta 639
           |||||||||||||||||||||||||||||||||||
Sbjct: 345 gtaatacaaaattgaatcattatcttctaactgta 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)