BAC Information

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BAC

Clone NameMSMg01-148G19
Chromosome3 (Build37)
Map Location 63,162,670 - 63,163,324
singlet/doubletsinglet
Overlap geneMme
Upstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984, LOC666967
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148G19.T7 (MSMg01no148_g19.b1)MSMg01-148G19.TJ (MSMg01no148_g19.g1)
ACCAG351423AG351424
length729724
length of high quality
(start - end)
664 (41 - 704)655 (70 - 724)
definitionCHROMAT_FILE: MSMg01no148_g19.b1 PHD_FILE: MSMg01no148_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:19 2005CHROMAT_FILE: MSMg01no148_g19.g1 PHD_FILE: MSMg01no148_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATT
CTTACCTGATGCACTACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCCTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGTGTTTCCTCAGAAA
ATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATAT
ATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCCTTATCCACAACAGCCAGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGC
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAA
CTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGG
ATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAGA
ATGAAGACTGAAGTGTGGACACTATGCCN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTGGGATTCCTTGGAATAAAGAAGACATAG
AATAGGGGAGTCTCCACTAAAGCCAGACTACTGAATTACCAAAAGAATTG
GGTTTGCAAAGAGTTGGCTCTCAGACCCTCCAATACCTTTAAAGGTCTGT
TGCTTATTAAGTCTGAAAGCCAGTATACTTTTTTAAAGGGATTTTGATAA
AACACACAGGAATAAGATAACCATTATGTTATAGATTGAATGTTATGGAA
GAAACAATTACCTAATGTGATTTGGACTACTTTAAATTTCCCATTCCAGT
GAAAAGAGATACATGGATCTAGGGATACTTCAAGACATGAGCCAATAACT
CAATATCAGCTTCACCTTTAGAGGAGTATTAAAAAATTGGCCATACAGCA
ATCTGTGGGCTGAGAAAGTTGAGGAATTCTAAAGAATTCTTTATGGATAT
ACCTTACCTATCTGATTTCGGCCTGAGGAATAAAATGCATTGACTACAGC
TGCTCCACTTATCCACCTATGGAAGACATAAAAGTTTGTTACAGAAGATA
CCCCATTTCCCCATTCAATCCACTTGCCACAAAAATAAATGTTAACTCTC
TCTGTGAAGCATGACCAACCAATTAATATTAGCCTACTAGAGTTAAAACT
CATTGGAAAATATTTTTATTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_g19.g1 MSMg01no148_g19.g1 CHROMAT_FILE:
MSMg01no148_g19.g1 PHD_FILE: MSMg01no148_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:19 2005
         (655 letters)



>mm_chr3_63162470_63163524
          Length = 1055

 Score = 1236 bits (639), Expect = 0.0
 Identities = 651/655 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgggattccttggaataaagaagacatagaataggggagtctccactaaagccagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 cttgggattccttggaataaagaagacatagaataggggagtctccactaaagccagact 796

                                                                       
Query: 61  actgaattaccaaaagaattgggtttgcaaagagttggctctcagaccctccaatacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 actgaattaccaaaagaattgggtttgcaaagagttggctctcagaccctccaatacctt 736

                                                                       
Query: 121 taaaggtctgttgcttattaagtctgaaagccagtatacttttttaaagggattttgata 180
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 735 taaaggtctgttgcttattaagtctgaaagccagtataattttttaaagggactttgata 676

                                                                       
Query: 181 aaacacacaggaataagataaccattatgttatagattgaatgttatggaagaaacaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aaacacacaggaataagataaccattatgttatagattgaatgttatggaagaaacaatt 616

                                                                       
Query: 241 acctaatgtgatttggactactttaaatttcccattccagtgaaaagagatacatggatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 acctaatgtgatttggactactttaaatttcccattccagtgaaaagagatacatggatc 556

                                                                       
Query: 301 tagggatacttcaagacatgagccaataactcaatatcagcttcacctttagaggagtat 360
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 555 tagggatacttcaagacatgagccaataactcaatatcagctttacttttagaggagtat 496

                                                                       
Query: 361 taaaaaattggccatacagcaatctgtgggctgagaaagttgaggaattctaaagaattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 taaaaaattggccatacagcaatctgtgggctgagaaagttgaggaattctaaagaattc 436

                                                                       
Query: 421 tttatggatataccttacctatctgatttcggcctgaggaataaaatgcattgactacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tttatggatataccttacctatctgatttcggcctgaggaataaaatgcattgactacag 376

                                                                       
Query: 481 ctgctccacttatccacctatggaagacataaaagtttgttacagaagataccccatttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctgctccacttatccacctatggaagacataaaagtttgttacagaagataccccatttc 316

                                                                       
Query: 541 cccattcaatccacttgccacaaaaataaatgttaactctctctgtgaagcatgaccaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cccattcaatccacttgccacaaaaataaatgttaactctctctgtgaagcatgaccaac 256

                                                                  
Query: 601 caattaatattagcctactagagttaaaactcattggaaaatatttttatttctt 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 caattaatattagcctactagagttaaaactcattggaaaatatttttatttctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)