BAC Information

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BAC

Clone NameMSMg01-148H01
Chromosome3 (Build37)
Map Location 53,379,722 - 53,380,342
singlet/doubletsinglet
Overlap geneFrem2
Upstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3
Downstream genePpia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148H01.T7 (MSMg01no148_h01.b1)MSMg01-148H01.TJ (MSMg01no148_h01.g1)
ACCAG351435AG351436
length706696
length of high quality
(start - end)
619 (82 - 700)---
definitionCHROMAT_FILE: MSMg01no148_h01.b1 PHD_FILE: MSMg01no148_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:20 2005CHROMAT_FILE: MSMg01no148_h01.g1 PHD_FILE: MSMg01no148_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCTAGCTAG
GGCGGAATTCTTGACCCTTTCCTAAAAAGGCTCATGACCACCTGTACAGC
TCAGCTCAACTTTACAAGAACACTTTTCTGTGACTTTCCTAAGTATTGTG
CACTACTGAGCATCCTCATCCCCAGACACTTGATTTTCTTTCTCTCCCAG
CACCCCCAGTATCATATGTACCTACCTGCTTATGTATTTAATCACGATCT
TCCTACTTCCCGTCTCCCACCCGAAGGGAAACCCCATGAGGGCATGGGCT
TCATTTCTGCATCAGCGGGGCCCCTTGTTTTGTCTGGCAAGTTAAAATCA
GTGTTTAATAAATGAATAATCCACTATAAGATGGGAGTATTCTAAAGATG
AATATATCAGAGATAGTCTTGGAGGAAAACAAAGGATACTGGAAAAGTTA
GTCATTAGAAAAGCACTTAATCTCAAGATTTCCTTACAAAGGTCAAGGCA
GGATTGAAACCTGGGCACAGGAAGTGCGCTCAGGGCAGTGAGCGTCACTG
CCTGCACCACCTCTAGGTAGACGAGAGCTGCATATACCTCTGGATTTGAG
AGTTGCAGGGAAAATGAACCGCAGAACTCAATGGCTCTTTTTTTTTTTAA
TTTTTCATTTGTATGCACCTATGTCTTTGCACATGTGTGTGCATGTGTTC
GCATGC
TACGATGCAGTGGGAGGCCCGGNGNCGCCTGTTTCTGACCCCGCCGNGAA
CNANAGAAGGTTTTCGGGACGCGCGCCNANACCAGCGGNCCNAAGGCAAG
CCCGGCNCCNAANNNAAAACCCCCNGGNNGAANAAAGAGGCCNACAACCG
GNAGCCCAGCAGAAAGAGGCAGGCGGGGGNNCGGGGCCGGAGGCAGAGAG
AAACGGGGAGAGGAGAAAGGGCAGGCGGACCNGAGCACACAGGCAGGAGG
GCCTTCCAGCCAGAGCAGGAGCGGCCCAGGCAGGACACAGCAAGGGACAC
CCAGGGACNACCGACAGACTTTTTTTTTTTANAGCACAGAGGGGACACCC
ACCCAGCACTAATTCTCCCCCCCGCTATAAATATAAAGGTTTTGTGTCTT
TTATTTGGGAACTCAACGATCTAAGGAGGGGTACAAACCCTACACAATAT
TTTCAGCAACAGACTTCCTTGCATTAATCTTTACACACTACTTCACGTGC
AATACGGTTATATCATACTACACAGCCGACAAATTAACCTTATACAACAA
TATCTTCCTGATCCCGCATTACCCAGGTAAGGCCCGCACCTTGGTATAGT
CCGACCCGTCTGGTACTTCCCCCCCCATCCCCCTCCACATGCCCTTCTCC
CCTGCGTCTTTTTTTTTTTTCTCTGCGCGGATGCCACTCCGTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_h01.b1 MSMg01no148_h01.b1 CHROMAT_FILE:
MSMg01no148_h01.b1 PHD_FILE: MSMg01no148_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:20 2005
         (619 letters)



>mm_chr3_53379522_53380542
          Length = 1021

 Score = 1120 bits (579), Expect = 0.0
 Identities = 610/621 (98%), Gaps = 2/621 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgaccacctgtacagctcagctcaactttacaagaacacttttctgtgactttccta 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 821 tcatgaccacctgtacagctcagttcaactttacaagaacacttttctgtgactttccta 762

                                                                       
Query: 61  agtattgtgcactactgagcatcctcatccccagacacttgattttctttctctcccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agtattgtgcactactgagcatcctcatccccagacacttgattttctttctctcccagc 702

                                                                       
Query: 121 acccccagtatcatatgtacctacctgcttatgtatttaatcacgatcttcctacttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 acccccagtatcatatgtacctacctgcttatgtatttaatcacgatcttcctacttccc 642

                                                                       
Query: 181 gtctcccacccgaagggaaaccccatgagggcatgggcttcatttctgcatcagcggggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gtctcccacccgaagggaaaccccatgagggcatgggcttcatttctgcatcagcggggc 582

                                                                       
Query: 241 cccttgttttgtctggcaagttaaaatcagtgtttaataaatgaataatccactataaga 300
           |||||||  || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 581 cccttgtaatgcctggcaagttaaaatcagtgtttaatagatgaataatccactataaga 522

                                                                       
Query: 301 tgggagtattctaaagatgaatatatcagagatagtcttggaggaaaacaaaggatactg 360
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 521 tgggagtattctaaatatgaatatatcagagatagtcttgaaggaaaacaaaggatactg 462

                                                                       
Query: 361 gaaaagttagtcattagaaaagcacttaatctcaagatttccttacaaaggtcaaggcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gaaaagttagtcattagaaaagcacttaatctcaagatttccttacaaaggtcaaggcag 402

                                                                       
Query: 421 gattgaaacctgggcacaggaagtgcgctcagggcagtgagcgtcactgcctgcaccacc 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 401 gattgaaacctgggcacaggaagtgcgctcagggcagtgagggtcactgcctgcaccacc 342

                                                                       
Query: 481 tctaggtagacgagagctgcatatacctctggatttgagagttgcagggaaaatgaaccg 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 341 tctaggtagacgagagctgcatatacctctggatttgagagttgcagggaaaatgaactg 282

                                                                       
Query: 541 cagaactcaatggctctttttt--tttttaatttttcatttgtatgcacctatgtctttg 598
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 281 cagaactcaatggctcttttttgttttttaatttttcatttgtatgcacctatgtctttg 222

                                
Query: 599 cacatgtgtgtgcatgtgttc 619
           |||||||||||||||||||||
Sbjct: 221 cacatgtgtgtgcatgtgttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1021
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1011
Effective search space:   615699
Effective search space used:   615699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)