BAC Information

Click to search

BAC

Clone NameMSMg01-148H02
Chromosome3 (Build37)
Map Location 19,991,652 - 19,992,243
singlet/doubletsinglet
Overlap geneHltf
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3
Downstream geneGyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b, EG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148H02.T7 (MSMg01no148_h02.b1)MSMg01-148H02.TJ (MSMg01no148_h02.g1)
ACCAG351437AG351438
length711709
length of high quality
(start - end)
664 (45 - 708)632 (73 - 704)
definitionCHROMAT_FILE: MSMg01no148_h02.b1 PHD_FILE: MSMg01no148_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:20 2005CHROMAT_FILE: MSMg01no148_h02.g1 PHD_FILE: MSMg01no148_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCTCACATATACTTCCTTTTGTTGTGCAAACCTTGTTCCTTGATTCCT
TGATTTAAAACTATTACTTAAAATAAAATGGCTGTAGCCAATTACTGAAT
GGAGTAAAGGTAGGCAGGTATCTTAGTTAGGGTTTCCATTGCTGTGAACA
GACACCATGACCGAGGTAACTTTGTTTTTAAAGATTTATTTATTTTAGGT
GTTTGAGTACACTGTCACTTTCTTCAGTCACACCAGAAGAGGGCATCTTG
GGGATCACATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTG
AACTCAAGACCTCTGGAAGAGCACTCTATCTTCTTAATCACTAAGCCATC
TCTCCACTCCACAGCCCCCACGGCAGCTATTATAAGGACAACATATAACT
GGGGCTGGCTTATAGGTTCAGAGGTTCAGTCCATTATCATCAAGACCAGA
GCATGGCAACACCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTGAAC
ATCTTCATCTAAAGGCTGCTTCCTGACAGTTAGGGGAGATCTTAAAACTC
ACACCCACAATGACACACTTCCTCCAACAAGGTCACACCTACTCCAGCAA
GGCCAAACCTCCTAATAGTACCACGCCATGGGCCAAACATACTCAAACCA
CCACAGCAGGC
CGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAAGGAAAAAACAGGCTCATGAAAGAA
CTGAGAGCCTAATTAATAACTACTATAAGCAGAAAGTTTATTTTCAAGCT
GTAAAACTAATCAAGTCATTAAAAAACAAAAAGCAAAAAAAAAAAAATTT
TCCAGAACATCAAGAAGAAGTTTGTGTACAGATGATGATGAACCCTAGAG
AAAATCCAAATTTAAAATTTTAATTGAAAACGTTCTAAATGAAAACTGTT
TCCGAATTATTATCTCAAGAAGGTACAAAGCTCTTTTTTGCAACATGCTA
TTTTATAAACATTCTTTAGTATTTTCAAAGTCAAAAAGTAAACAGGTGAA
TTTTAGAGTAATTTAGAAATATGAAAAATAGCAATTAAATTCAATCTTAA
ACAATCTCTCCGTAGGGCTGGAGAATAATTAAGTGGCTAGGAGAGCTTAT
TGCTCTTGCAGAAGACTGAAATTCTGTTCTCAGTACCCACCCCATGTGAC
GCACAAATACCTGTAATCCCAACTATAGGGACCTCCAAAGGCACTAGTGC
TCACCACACAGACAGACAGACAGACAGACAGACAGACAGACAAGACAGGC
AGACAATTGAAAAATAATAAATAATTTAAAGGTCTAGGTATATGCATACT
TACTCCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_h02.g1 MSMg01no148_h02.g1 CHROMAT_FILE:
MSMg01no148_h02.g1 PHD_FILE: MSMg01no148_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:20 2005
         (632 letters)



>mm_chr3_19991652_19992683
          Length = 1032

 Score = 1089 bits (563), Expect = 0.0
 Identities = 588/601 (97%), Gaps = 10/601 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaggaaaa-aacaggctcatgaaagaactgagagcctaattaataactactataagca 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttaaggaaaataacaggctcatgaaagaactgagagcctaattaataactactataagca 533

                                                                       
Query: 60  gaaagtttattttcaagctgtaaaactaatcaagtcattaaaaaacaaaaagcaaaaaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 532 gaaagtttattttcaagctgtaaaactaatcaagtcattaaaaaacaaaaagc-aaaaaa 474

                                                                       
Query: 120 aaaaaattttccagaacatcaagaagaagtttgtgtacagatgatgatgaaccctagaga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aaaaaattttccagaacatcaagaagaagtttgtgtacagatgatgatgaaccctagaga 414

                                                                       
Query: 180 aaatccaaatttaaaattttaattgaaaacgttctaaatgaaaactgtttccgaattatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aaatccaaatttaaaattttaattgaaaacgttctaaatgaaaactgtttccgaattatt 354

                                                                       
Query: 240 atctcaagaaggtacaaagctcttttttgcaacatgctattttataaacattctttagta 299
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 353 atctcaagaaggtacaaagctcttttttgcaacatgctattttatagacattctttagta 294

                                                                       
Query: 300 ttttcaaagtcaaaaagtaaacaggtgaattttagagtaatttagaaatatgaaaaatag 359
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 293 ttttcaaagtcaaaaagtaaacaggtgaattttagagtaatttagaaacatgaaaaatag 234

                                                                       
Query: 360 caattaaattcaatcttaaacaatctctccgtagggctggagaataattaagtggctagg 419
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 caattaaattcaaccttaaacaatctctccgtagggctggagaataattaagtggctagg 174

                                                                       
Query: 420 agagcttattgctcttgcagaagactgaaattctgttctcagtacccaccccatgtgacg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 agagcttattgctcttgcagaagactgaaattctgttctcagtacccaccccatgtgacg 114

                                                                       
Query: 480 cacaaatacctgtaatcccaactatagggacctccaaaggcactagtgctcaccacacag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 113 cacaaatacctgtaatcccaactatagggacctccaaaggcactagtgctcaccac---- 58

                                                                       
Query: 540 acagacagacagacagacagacagacagacaagacaggcagacaattgaaaaataataaa 599
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  ----acagacagacagacagacagacagacaagacaggcagacaattgaaaaataataaa 2

            
Query: 600 t 600
           |
Sbjct: 1   t 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)